Variation ID : sbi33825453

Variation Detail



Variation ID sbi33825453
Type INDEL
Position Chr01 21317-21318
Ref /Alleles AT/ A or ATT
MAF ATT: 0.026
5' Flank ATAAAGCCATAAAGGATACATGCAGAAATG
3' Flank TTTTTTTAGAGGAAAATCATGGCCTCATGG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved AT|AT
2 103 Improved AT|AT
3 107 Improved AT|AT
4 11 Improved AT|AT
5 110 Improved AT|AT
6 123 Landrace AT|AT
7 131 Improved AT|AT
8 132 Improved AT|AT
9 135 Improved AT|AT
10 137 Improved AT|AT
11 138 Improved AT|AT
12 14 Improved AT|AT
13 140 Improved AT|AT
14 141 Improved AT|AT
15 144 Improved AT|AT
16 150 Improved N|N
17 154 Improved AT|AT
18 159 Landrace AT|AT
19 16 Improved AT|AT
20 161 Landrace AT|AT
21 167 Improved AT|AT
22 168 Improved AT|AT
23 170 Improved AT|AT
24 173 Improved AT|AT
25 175 Improved N|N
26 176 Improved N|N
27 182 Landrace N|N
28 186 Improved AT|AT
29 190 Improved AT|AT
30 192 Improved AT|AT
31 194 Improved N|N
32 195 Improved N|N
33 197 Improved N|N
34 J22 Landrace N|N
35 J26 Landrace AT|AT
36 J5 Landrace N|N
37 J50 Landrace AT|AT
38 2001 Landrace N|N
39 2005 Improved N|N
40 2008 Improved AT|AT
41 2009 Landrace ATT|ATT
42 201 Improved AT|AT
43 2010 Landrace AT|AT
44 2016 Improved N|N
45 2019 Improved AT|AT
46 202 Improved AT|AT
47 2021 Improved N|N
48 2023 Improved N|N
49 2026 Improved AT|AT
50 2029 Improved N|N
51 2030 Landrace AT|AT
52 2031 Landrace AT|AT
53 2036 Improved AT|AT
54 2037 Improved AT|AT
55 2038 Improved AT|AT
56 2039 Improved N|N
57 204 Improved AT|AT
58 2042 Improved AT|AT
59 2043 Improved ATT|ATT
60 2048 Improved AT|AT
61 2049 Improved AT|AT
62 205 Improved N|N
63 2050 Improved AT|AT
64 2052 Improved AT|AT
65 2054 Improved N|N
66 2056 Improved AT|AT
67 2059 Improved ATT|ATT
68 206 Improved AT|AT
69 2064 Improved N|N
70 2065 Improved AT|AT
71 2067 Improved N|N
72 2068 Improved N|N
73 2069 Improved N|N
74 2071 Improved AT|AT
75 2074 Improved N|N
76 2075 Improved AT|AT
77 2076 Improved AT|AT
78 2080 Improved N|N
79 2081 Improved AT|AT
80 2082 Improved N|N
81 2086 Improved N|N
82 2088 Improved AT|AT
83 260 Wild sorghum AT|AT
84 261 Improved AT|AT
85 262 Improved AT|AT
86 263 Improved AT|AT
87 286 Improved AT|AT
88 29 Improved AT|AT
89 3 Improved AT|AT
90 302546 S.propinquum N|N
91 31 Improved AT|AT
92 32 Improved AT|AT
93 34 Improved N|N
94 346 Landrace AT|AT
95 348 Wild sorghum AT|AT
96 353 Wild sorghum AT|AT
97 355 Wild sorghum AT|AT
98 357 Wild sorghum N|N
99 364 Wild sorghum N|N
100 367 Landrace AT|AT
101 s37 S.propinquum A|A
102 s38 S.propinquum A|A
103 370 Landrace N|N
104 377 Wild sorghum AT|AT
105 392 Wild sorghum AT|AT
106 394 Wild sorghum N|N
107 40 Improved AT|AT
108 42 Improved AT|AT
109 43 Improved AT|AT
110 45 Improved AT|AT
111 47 Improved AT|AT
112 48 Improved N|N
113 51 Improved AT|AT
114 53 Improved AT|AT
115 56 Improved AT|AT
116 61 Improved AT|AT
117 62 Improved AT|AT
118 66 Landrace AT|AT
119 67 Improved N|N
120 68 Improved AT|AT
121 70 Improved N|N
122 73 Improved N|N
123 75 Improved N|N
124 88 Improved AT|AT
125 89 Improved AT|AT
126 91 Improved ATT|ATT
127 92 Improved AT|AT
128 93 Improved ATT|ATT
129 94 Improved AT|AT
130 95 Improved AT|AT
131 96 Improved AT|AT
132 97 Improved AT|AT
133 s1 Improved AT|AT
134 s36 Wild sorghum AT|AT
135 s2 Landrace AT|AT
136 s3 Improved AT|AT
137 s32 Improved AT|AT
138 s43 Weedy AT|AT
139 s40 Landrace AT|AT
140 s41 Weedy AT|AT
141 s39 Landrace AT|AT
142 s42 Landrace AT|AT
143 s47 Improved AT|AT
144 s5 Landrace AT|AT
145 GW102 Landrace AT|AT
146 GW103 Landrace AT|ATT
147 GW104 Landrace AT|AT
148 GW105 Landrace AT|AT
149 GW16 Landrace N|N
150 GW2 Landrace AT|AT
151 GW34 Landrace N|N
152 GW37 Landrace N|N
153 GW58 Landrace AT|AT
154 GW59 Landrace N|N
155 GW9 Landrace N|N
156 s4 Weedy AT|AT
157 s6 Improved AT|AT
158 s7 Landrace AT|AT
159 s8 Landrace AT|AT
160 s9 Landrace AT|AT
161 J101 Landrace AT|AT
162 J103 Improved AT|AT
163 J112 Landrace AT|AT
164 J113 Improved AT|AT
165 J129 Improved AT|AT
166 J130 Improved AT|AT
167 J136 Improved AT|AT
168 J152 Improved AT|AT
169 J2 Landrace AT|AT
170 J20 Landrace AT|AT
171 J4 Landrace AT|AT
172 J42 Landrace AT|AT
173 J44 Landrace AT|AT
174 J49 Landrace N|N
175 J52 Landrace AT|AT
176 J53 Landrace N|N
177 J54 Landrace N|N
178 J57 Landrace AT|AT
179 J59 Landrace AT|AT
180 J64 Landrace AT|AT
181 J66 Landrace AT|AT
182 J67 Landrace AT|AT
183 J69 Landrace AT|AT
184 J87 Landrace N|N
185 J99 Landrace AT|AT
186 s45 Landrace AT|AT
187 s11 Improved AT|ATT
188 s10 Improved AT|AT
189 s46 Improved AT|AT
190 s12 Improved AT|AT
191 s13 Landrace AT|AT
192 MHMD Landrace AT|AT
193 s14 Improved AT|AT
194 s15 Improved AT|AT
195 s34 Weedy AT|AT
196 s33 Wild sorghum AT|AT
197 s21 Wild sorghum AT|AT
198 s16 Wild sorghum AT|AT
199 s44 Improved AT|AT
200 s35 Landrace AT|AT
201 s31 Wild sorghum AT|AT
202 s17 Improved AT|AT
203 s18 Improved AT|AT
204 s20 Improved AT|AT
205 s19 Improved AT|AT
206 s22 Landrace AT|AT
207 s23 Landrace AT|AT
208 s24 Landrace AT|AT
209 s25 Landrace AT|AT
210 s26 Landrace AT|AT
211 s27 Landrace AT|AT
212 s28 Landrace AT|AT
213 s29 Landrace AT|AT
214 s30 Landrace AT|AT
215 SL25 Wild sorghum AT|AT
216 SL105 Wild sorghum AT|AT
217 SL108 Wild sorghum AT|AT
218 SL109 Wild sorghum AT|AT
219 SL12 Wild sorghum N|N
220 SL129 Wild sorghum AT|AT
221 SL130 Wild sorghum A|A
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum AT|AT
224 SL137 Wild sorghum AT|AT
225 SL138 Wild sorghum AT|AT
226 SL140 Wild sorghum AT|AT
227 SL141 Wild sorghum AT|AT
228 SL19 Wild sorghum AT|AT
229 SL28 Wild sorghum AT|AT
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum AT|AT
232 SL36 Wild sorghum AT|AT
233 SL37 Wild sorghum AT|AT
234 SL39 Wild sorghum AT|AT
235 SL41 Wild sorghum AT|AT
236 SL43 Wild sorghum AT|AT
237 SL47 Wild sorghum AT|AT
238 SL49 Wild sorghum AT|AT
239 SL51 Wild sorghum A|A
240 SL53 Wild sorghum N|N
241 SL62 Wild sorghum N|N
242 SL83 Wild sorghum AT|AT
243 SL97 Landrace AT|AT
244 s48 Improved AT|AT
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum N|N
247 Tu30 Wild sorghum AT|AT
248 Tu5 Wild sorghum N|N
249 WSC5 Landrace N|N
250 WSC15 Landrace N|N
251 WSC19 Landrace AT|AT
252 WSC30 Landrace AT|AT
253 WSC52 Landrace AT|AT
254 WSC6 Landrace N|N
255 WSC61 Landrace AT|AT
256 WSC71 Improved AT|AT
257 WSC72 Landrace AT|AT
258 WSC79 Landrace AT|AT
259 WSC94 Landrace AT|AT
260 WSC99 Landrace AT|AT
261 WSC100 Landrace AT|AT
262 WSC104 Landrace AT|AT
263 WSC105 Landrace AT|AT
264 WSC12 Landrace AT|AT
265 WSC13 Landrace AT|AT
266 WSC16 Landrace N|N
267 WSC17 Landrace AT|AT
268 WSC18 Landrace AT|AT
269 WSC20 Landrace AT|AT
270 WSC24 Landrace AT|AT
271 WSC25 Landrace N|N
272 WSC29 Landrace N|N
273 WSC31 Landrace AT|AT
274 WSC32 Landrace AT|AT
275 WSC34 Landrace AT|AT
276 WSC38 Landrace AT|AT
277 WSC39 Improved N|N
278 WSC40 Landrace AT|AT
279 WSC54 Landrace AT|AT
280 WSC56 Landrace AT|AT
281 WSC59 Landrace AT|AT
282 WSC68 Landrace AT|AT
283 WSC70 Landrace AT|AT
284 WSC73 Landrace AT|AT
285 WSC81 Landrace AT|AT
286 WSC85 Improved AT|AT
287 WSC91 Landrace AT|AT
288 WSC93 Landrace AT|AT
289 WSC98 Landrace N|N

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825453 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825453 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825453 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825453 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825453 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825453 Sobic.001G000300 downstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825453 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825453 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825453 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825453 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825453 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825453 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825453 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi33825453 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

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