Variation ID : sbi33825499

Variation Detail



Variation ID sbi33825499
Type INDEL
Position Chr01 23936-23942
Ref /Alleles ACGGTGG/ A
MAF A: 0.026
5' Flank GCCAGATCCACAGGCGATGCTAGATCCTCG
3' Flank CGATGCTTGCATCTCCGGTGGGGACTGAAG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved ACGGTGG|ACGGTGG
2 103 Improved ACGGTGG|ACGGTGG
3 107 Improved ACGGTGG|ACGGTGG
4 11 Improved ACGGTGG|ACGGTGG
5 110 Improved ACGGTGG|ACGGTGG
6 123 Landrace N|N
7 131 Improved N|N
8 132 Improved ACGGTGG|ACGGTGG
9 135 Improved ACGGTGG|ACGGTGG
10 137 Improved ACGGTGG|ACGGTGG
11 138 Improved ACGGTGG|ACGGTGG
12 14 Improved ACGGTGG|ACGGTGG
13 140 Improved ACGGTGG|ACGGTGG
14 141 Improved ACGGTGG|ACGGTGG
15 144 Improved ACGGTGG|ACGGTGG
16 150 Improved ACGGTGG|ACGGTGG
17 154 Improved ACGGTGG|ACGGTGG
18 159 Landrace ACGGTGG|ACGGTGG
19 16 Improved ACGGTGG|ACGGTGG
20 161 Landrace ACGGTGG|ACGGTGG
21 167 Improved ACGGTGG|ACGGTGG
22 168 Improved ACGGTGG|ACGGTGG
23 170 Improved ACGGTGG|ACGGTGG
24 173 Improved ACGGTGG|ACGGTGG
25 175 Improved ACGGTGG|ACGGTGG
26 176 Improved ACGGTGG|ACGGTGG
27 182 Landrace ACGGTGG|ACGGTGG
28 186 Improved ACGGTGG|ACGGTGG
29 190 Improved ACGGTGG|ACGGTGG
30 192 Improved ACGGTGG|ACGGTGG
31 194 Improved ACGGTGG|ACGGTGG
32 195 Improved ACGGTGG|ACGGTGG
33 197 Improved ACGGTGG|ACGGTGG
34 J22 Landrace ACGGTGG|ACGGTGG
35 J26 Landrace ACGGTGG|ACGGTGG
36 J5 Landrace ACGGTGG|ACGGTGG
37 J50 Landrace ACGGTGG|ACGGTGG
38 2001 Landrace ACGGTGG|ACGGTGG
39 2005 Improved ACGGTGG|ACGGTGG
40 2008 Improved N|N
41 2009 Landrace ACGGTGG|ACGGTGG
42 201 Improved ACGGTGG|ACGGTGG
43 2010 Landrace ACGGTGG|ACGGTGG
44 2016 Improved ACGGTGG|ACGGTGG
45 2019 Improved N|N
46 202 Improved ACGGTGG|ACGGTGG
47 2021 Improved ACGGTGG|ACGGTGG
48 2023 Improved ACGGTGG|ACGGTGG
49 2026 Improved ACGGTGG|ACGGTGG
50 2029 Improved ACGGTGG|ACGGTGG
51 2030 Landrace ACGGTGG|ACGGTGG
52 2031 Landrace N|N
53 2036 Improved ACGGTGG|ACGGTGG
54 2037 Improved ACGGTGG|ACGGTGG
55 2038 Improved N|N
56 2039 Improved ACGGTGG|ACGGTGG
57 204 Improved ACGGTGG|ACGGTGG
58 2042 Improved ACGGTGG|ACGGTGG
59 2043 Improved ACGGTGG|ACGGTGG
60 2048 Improved ACGGTGG|ACGGTGG
61 2049 Improved ACGGTGG|ACGGTGG
62 205 Improved ACGGTGG|ACGGTGG
63 2050 Improved N|N
64 2052 Improved ACGGTGG|ACGGTGG
65 2054 Improved ACGGTGG|ACGGTGG
66 2056 Improved ACGGTGG|ACGGTGG
67 2059 Improved ACGGTGG|ACGGTGG
68 206 Improved N|N
69 2064 Improved ACGGTGG|ACGGTGG
70 2065 Improved ACGGTGG|ACGGTGG
71 2067 Improved ACGGTGG|ACGGTGG
72 2068 Improved ACGGTGG|ACGGTGG
73 2069 Improved ACGGTGG|ACGGTGG
74 2071 Improved ACGGTGG|ACGGTGG
75 2074 Improved ACGGTGG|ACGGTGG
76 2075 Improved ACGGTGG|ACGGTGG
77 2076 Improved ACGGTGG|ACGGTGG
78 2080 Improved ACGGTGG|ACGGTGG
79 2081 Improved ACGGTGG|ACGGTGG
80 2082 Improved ACGGTGG|ACGGTGG
81 2086 Improved ACGGTGG|ACGGTGG
82 2088 Improved ACGGTGG|ACGGTGG
83 260 Wild sorghum ACGGTGG|ACGGTGG
84 261 Improved ACGGTGG|ACGGTGG
85 262 Improved ACGGTGG|ACGGTGG
86 263 Improved ACGGTGG|ACGGTGG
87 286 Improved ACGGTGG|ACGGTGG
88 29 Improved ACGGTGG|ACGGTGG
89 3 Improved ACGGTGG|ACGGTGG
90 302546 S.propinquum N|N
91 31 Improved ACGGTGG|ACGGTGG
92 32 Improved N|N
93 34 Improved ACGGTGG|ACGGTGG
94 346 Landrace ACGGTGG|ACGGTGG
95 348 Wild sorghum ACGGTGG|ACGGTGG
96 353 Wild sorghum ACGGTGG|ACGGTGG
97 355 Wild sorghum ACGGTGG|ACGGTGG
98 357 Wild sorghum ACGGTGG|ACGGTGG
99 364 Wild sorghum ACGGTGG|A
100 367 Landrace ACGGTGG|ACGGTGG
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace N|N
104 377 Wild sorghum N|N
105 392 Wild sorghum ACGGTGG|ACGGTGG
106 394 Wild sorghum ACGGTGG|ACGGTGG
107 40 Improved ACGGTGG|ACGGTGG
108 42 Improved ACGGTGG|ACGGTGG
109 43 Improved ACGGTGG|ACGGTGG
110 45 Improved ACGGTGG|ACGGTGG
111 47 Improved ACGGTGG|ACGGTGG
112 48 Improved ACGGTGG|ACGGTGG
113 51 Improved ACGGTGG|ACGGTGG
114 53 Improved N|N
115 56 Improved ACGGTGG|ACGGTGG
116 61 Improved ACGGTGG|ACGGTGG
117 62 Improved ACGGTGG|ACGGTGG
118 66 Landrace N|N
119 67 Improved ACGGTGG|ACGGTGG
120 68 Improved ACGGTGG|ACGGTGG
121 70 Improved ACGGTGG|ACGGTGG
122 73 Improved ACGGTGG|ACGGTGG
123 75 Improved ACGGTGG|ACGGTGG
124 88 Improved ACGGTGG|ACGGTGG
125 89 Improved ACGGTGG|ACGGTGG
126 91 Improved ACGGTGG|ACGGTGG
127 92 Improved ACGGTGG|ACGGTGG
128 93 Improved ACGGTGG|ACGGTGG
129 94 Improved ACGGTGG|ACGGTGG
130 95 Improved ACGGTGG|ACGGTGG
131 96 Improved ACGGTGG|ACGGTGG
132 97 Improved ACGGTGG|ACGGTGG
133 s1 Improved ACGGTGG|ACGGTGG
134 s36 Wild sorghum ACGGTGG|A
135 s2 Landrace ACGGTGG|ACGGTGG
136 s3 Improved N|N
137 s32 Improved ACGGTGG|ACGGTGG
138 s43 Weedy ACGGTGG|A
139 s40 Landrace N|N
140 s41 Weedy N|N
141 s39 Landrace ACGGTGG|ACGGTGG
142 s42 Landrace ACGGTGG|ACGGTGG
143 s47 Improved ACGGTGG|ACGGTGG
144 s5 Landrace ACGGTGG|ACGGTGG
145 GW102 Landrace ACGGTGG|ACGGTGG
146 GW103 Landrace ACGGTGG|ACGGTGG
147 GW104 Landrace ACGGTGG|ACGGTGG
148 GW105 Landrace N|N
149 GW16 Landrace ACGGTGG|ACGGTGG
150 GW2 Landrace ACGGTGG|ACGGTGG
151 GW34 Landrace ACGGTGG|ACGGTGG
152 GW37 Landrace ACGGTGG|ACGGTGG
153 GW58 Landrace ACGGTGG|ACGGTGG
154 GW59 Landrace ACGGTGG|ACGGTGG
155 GW9 Landrace ACGGTGG|ACGGTGG
156 s4 Weedy ACGGTGG|ACGGTGG
157 s6 Improved ACGGTGG|ACGGTGG
158 s7 Landrace N|N
159 s8 Landrace ACGGTGG|ACGGTGG
160 s9 Landrace ACGGTGG|ACGGTGG
161 J101 Landrace ACGGTGG|ACGGTGG
162 J103 Improved ACGGTGG|ACGGTGG
163 J112 Landrace ACGGTGG|ACGGTGG
164 J113 Improved ACGGTGG|ACGGTGG
165 J129 Improved ACGGTGG|ACGGTGG
166 J130 Improved ACGGTGG|ACGGTGG
167 J136 Improved ACGGTGG|ACGGTGG
168 J152 Improved ACGGTGG|ACGGTGG
169 J2 Landrace ACGGTGG|ACGGTGG
170 J20 Landrace ACGGTGG|ACGGTGG
171 J4 Landrace ACGGTGG|ACGGTGG
172 J42 Landrace ACGGTGG|ACGGTGG
173 J44 Landrace ACGGTGG|ACGGTGG
174 J49 Landrace ACGGTGG|ACGGTGG
175 J52 Landrace ACGGTGG|ACGGTGG
176 J53 Landrace ACGGTGG|ACGGTGG
177 J54 Landrace ACGGTGG|ACGGTGG
178 J57 Landrace ACGGTGG|ACGGTGG
179 J59 Landrace N|N
180 J64 Landrace ACGGTGG|ACGGTGG
181 J66 Landrace N|N
182 J67 Landrace ACGGTGG|ACGGTGG
183 J69 Landrace N|N
184 J87 Landrace ACGGTGG|ACGGTGG
185 J99 Landrace ACGGTGG|ACGGTGG
186 s45 Landrace ACGGTGG|ACGGTGG
187 s11 Improved N|N
188 s10 Improved ACGGTGG|ACGGTGG
189 s46 Improved N|N
190 s12 Improved ACGGTGG|ACGGTGG
191 s13 Landrace ACGGTGG|ACGGTGG
192 MHMD Landrace ACGGTGG|ACGGTGG
193 s14 Improved N|N
194 s15 Improved N|N
195 s34 Weedy ACGGTGG|ACGGTGG
196 s33 Wild sorghum ACGGTGG|A
197 s21 Wild sorghum ACGGTGG|A
198 s16 Wild sorghum ACGGTGG|ACGGTGG
199 s44 Improved ACGGTGG|ACGGTGG
200 s35 Landrace ACGGTGG|ACGGTGG
201 s31 Wild sorghum ACGGTGG|ACGGTGG
202 s17 Improved ACGGTGG|ACGGTGG
203 s18 Improved ACGGTGG|ACGGTGG
204 s20 Improved ACGGTGG|ACGGTGG
205 s19 Improved ACGGTGG|ACGGTGG
206 s22 Landrace ACGGTGG|ACGGTGG
207 s23 Landrace ACGGTGG|ACGGTGG
208 s24 Landrace ACGGTGG|ACGGTGG
209 s25 Landrace ACGGTGG|ACGGTGG
210 s26 Landrace ACGGTGG|ACGGTGG
211 s27 Landrace ACGGTGG|ACGGTGG
212 s28 Landrace ACGGTGG|ACGGTGG
213 s29 Landrace ACGGTGG|ACGGTGG
214 s30 Landrace ACGGTGG|ACGGTGG
215 SL25 Wild sorghum ACGGTGG|ACGGTGG
216 SL105 Wild sorghum ACGGTGG|A
217 SL108 Wild sorghum ACGGTGG|ACGGTGG
218 SL109 Wild sorghum ACGGTGG|ACGGTGG
219 SL12 Wild sorghum ACGGTGG|ACGGTGG
220 SL129 Wild sorghum ACGGTGG|A
221 SL130 Wild sorghum ACGGTGG|ACGGTGG
222 SL135 Wild sorghum ACGGTGG|A
223 SL136 Wild sorghum N|N
224 SL137 Wild sorghum ACGGTGG|ACGGTGG
225 SL138 Wild sorghum ACGGTGG|ACGGTGG
226 SL140 Wild sorghum ACGGTGG|ACGGTGG
227 SL141 Wild sorghum ACGGTGG|ACGGTGG
228 SL19 Wild sorghum ACGGTGG|ACGGTGG
229 SL28 Wild sorghum ACGGTGG|ACGGTGG
230 SL32 Wild sorghum ACGGTGG|A
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum ACGGTGG|ACGGTGG
233 SL37 Wild sorghum ACGGTGG|ACGGTGG
234 SL39 Wild sorghum ACGGTGG|A
235 SL41 Wild sorghum ACGGTGG|ACGGTGG
236 SL43 Wild sorghum ACGGTGG|ACGGTGG
237 SL47 Wild sorghum ACGGTGG|ACGGTGG
238 SL49 Wild sorghum ACGGTGG|ACGGTGG
239 SL51 Wild sorghum N|N
240 SL53 Wild sorghum ACGGTGG|ACGGTGG
241 SL62 Wild sorghum ACGGTGG|A
242 SL83 Wild sorghum ACGGTGG|ACGGTGG
243 SL97 Landrace ACGGTGG|ACGGTGG
244 s48 Improved ACGGTGG|ACGGTGG
245 Tu13 Wild sorghum ACGGTGG|ACGGTGG
246 Tu14 Wild sorghum ACGGTGG|A
247 Tu30 Wild sorghum ACGGTGG|A
248 Tu5 Wild sorghum ACGGTGG|ACGGTGG
249 WSC5 Landrace ACGGTGG|ACGGTGG
250 WSC15 Landrace ACGGTGG|ACGGTGG
251 WSC19 Landrace ACGGTGG|ACGGTGG
252 WSC30 Landrace ACGGTGG|ACGGTGG
253 WSC52 Landrace ACGGTGG|ACGGTGG
254 WSC6 Landrace ACGGTGG|ACGGTGG
255 WSC61 Landrace N|N
256 WSC71 Improved ACGGTGG|ACGGTGG
257 WSC72 Landrace ACGGTGG|ACGGTGG
258 WSC79 Landrace ACGGTGG|ACGGTGG
259 WSC94 Landrace ACGGTGG|ACGGTGG
260 WSC99 Landrace ACGGTGG|ACGGTGG
261 WSC100 Landrace N|N
262 WSC104 Landrace ACGGTGG|ACGGTGG
263 WSC105 Landrace ACGGTGG|ACGGTGG
264 WSC12 Landrace ACGGTGG|ACGGTGG
265 WSC13 Landrace ACGGTGG|ACGGTGG
266 WSC16 Landrace N|N
267 WSC17 Landrace ACGGTGG|ACGGTGG
268 WSC18 Landrace ACGGTGG|ACGGTGG
269 WSC20 Landrace ACGGTGG|ACGGTGG
270 WSC24 Landrace ACGGTGG|ACGGTGG
271 WSC25 Landrace N|N
272 WSC29 Landrace ACGGTGG|ACGGTGG
273 WSC31 Landrace N|N
274 WSC32 Landrace ACGGTGG|ACGGTGG
275 WSC34 Landrace ACGGTGG|ACGGTGG
276 WSC38 Landrace N|N
277 WSC39 Improved ACGGTGG|ACGGTGG
278 WSC40 Landrace N|N
279 WSC54 Landrace ACGGTGG|ACGGTGG
280 WSC56 Landrace ACGGTGG|ACGGTGG
281 WSC59 Landrace ACGGTGG|ACGGTGG
282 WSC68 Landrace ACGGTGG|ACGGTGG
283 WSC70 Landrace N|N
284 WSC73 Landrace ACGGTGG|ACGGTGG
285 WSC81 Landrace ACGGTGG|ACGGTGG
286 WSC85 Improved ACGGTGG|ACGGTGG
287 WSC91 Landrace ACGGTGG|ACGGTGG
288 WSC93 Landrace ACGGTGG|ACGGTGG
289 WSC98 Landrace ACGGTGG|ACGGTGG

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825499 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825499 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825499 Sobic.001G000300 inframe deletion |MODERATE Sobic.001G000300.2 mRNA 69 cgCC/cgt Sobic.001G000300.2.p 23 RHR/R
sbi33825499 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825499 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825499 Sobic.001G000400 downstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825499 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser