Variation ID : sbi33825513

Variation Detail



Variation ID sbi33825513
Type INDEL
Position Chr01 24472-24485
Ref /Alleles GTAGAATAATATTC/ G or *
MAF G: 0.074
5' Flank TATTTTTTCTACCCAGTTTTGACTTGCGGT
3' Flank TACACCTAAGGTGTAGAATAGCGCTATATA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved N|N
3 107 Improved N|N
4 11 Improved GTAGAATAATATTC|GTAGAATAATATTC
5 110 Improved N|N
6 123 Landrace GTAGAATAATATTC|GTAGAATAATATTC
7 131 Improved GTAGAATAATATTC|GTAGAATAATATTC
8 132 Improved G|G
9 135 Improved GTAGAATAATATTC|GTAGAATAATATTC
10 137 Improved GTAGAATAATATTC|GTAGAATAATATTC
11 138 Improved GTAGAATAATATTC|GTAGAATAATATTC
12 14 Improved GTAGAATAATATTC|GTAGAATAATATTC
13 140 Improved N|N
14 141 Improved N|N
15 144 Improved GTAGAATAATATTC|GTAGAATAATATTC
16 150 Improved N|N
17 154 Improved N|N
18 159 Landrace N|N
19 16 Improved N|N
20 161 Landrace N|N
21 167 Improved GTAGAATAATATTC|GTAGAATAATATTC
22 168 Improved N|N
23 170 Improved N|N
24 173 Improved G|G
25 175 Improved GTAGAATAATATTC|GTAGAATAATATTC
26 176 Improved N|N
27 182 Landrace N|N
28 186 Improved N|N
29 190 Improved N|N
30 192 Improved *|*
31 194 Improved N|N
32 195 Improved GTAGAATAATATTC|GTAGAATAATATTC
33 197 Improved GTAGAATAATATTC|GTAGAATAATATTC
34 J22 Landrace GTAGAATAATATTC|GTAGAATAATATTC
35 J26 Landrace GTAGAATAATATTC|GTAGAATAATATTC
36 J5 Landrace GTAGAATAATATTC|GTAGAATAATATTC
37 J50 Landrace GTAGAATAATATTC|GTAGAATAATATTC
38 2001 Landrace N|N
39 2005 Improved GTAGAATAATATTC|GTAGAATAATATTC
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace N|N
44 2016 Improved N|N
45 2019 Improved GTAGAATAATATTC|GTAGAATAATATTC
46 202 Improved GTAGAATAATATTC|GTAGAATAATATTC
47 2021 Improved GTAGAATAATATTC|GTAGAATAATATTC
48 2023 Improved N|N
49 2026 Improved N|N
50 2029 Improved N|N
51 2030 Landrace N|N
52 2031 Landrace GTAGAATAATATTC|GTAGAATAATATTC
53 2036 Improved GTAGAATAATATTC|GTAGAATAATATTC
54 2037 Improved N|N
55 2038 Improved N|N
56 2039 Improved GTAGAATAATATTC|GTAGAATAATATTC
57 204 Improved GTAGAATAATATTC|GTAGAATAATATTC
58 2042 Improved GTAGAATAATATTC|GTAGAATAATATTC
59 2043 Improved N|N
60 2048 Improved N|N
61 2049 Improved N|N
62 205 Improved N|N
63 2050 Improved N|N
64 2052 Improved GTAGAATAATATTC|GTAGAATAATATTC
65 2054 Improved GTAGAATAATATTC|GTAGAATAATATTC
66 2056 Improved GTAGAATAATATTC|GTAGAATAATATTC
67 2059 Improved GTAGAATAATATTC|GTAGAATAATATTC
68 206 Improved N|N
69 2064 Improved GTAGAATAATATTC|GTAGAATAATATTC
70 2065 Improved N|N
71 2067 Improved GTAGAATAATATTC|GTAGAATAATATTC
72 2068 Improved GTAGAATAATATTC|GTAGAATAATATTC
73 2069 Improved GTAGAATAATATTC|GTAGAATAATATTC
74 2071 Improved N|N
75 2074 Improved GTAGAATAATATTC|GTAGAATAATATTC
76 2075 Improved *|*
77 2076 Improved *|*
78 2080 Improved GTAGAATAATATTC|GTAGAATAATATTC
79 2081 Improved GTAGAATAATATTC|GTAGAATAATATTC
80 2082 Improved N|N
81 2086 Improved GTAGAATAATATTC|GTAGAATAATATTC
82 2088 Improved *|*
83 260 Wild sorghum N|N
84 261 Improved GTAGAATAATATTC|GTAGAATAATATTC
85 262 Improved GTAGAATAATATTC|GTAGAATAATATTC
86 263 Improved GTAGAATAATATTC|GTAGAATAATATTC
87 286 Improved GTAGAATAATATTC|GTAGAATAATATTC
88 29 Improved G|G
89 3 Improved N|N
90 302546 S.propinquum N|N
91 31 Improved N|N
92 32 Improved GTAGAATAATATTC|GTAGAATAATATTC
93 34 Improved G|G
94 346 Landrace GTAGAATAATATTC|GTAGAATAATATTC
95 348 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
96 353 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
97 355 Wild sorghum N|N
98 357 Wild sorghum N|N
99 364 Wild sorghum G|G
100 367 Landrace N|N
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace GTAGAATAATATTC|GTAGAATAATATTC
104 377 Wild sorghum N|N
105 392 Wild sorghum N|N
106 394 Wild sorghum N|N
107 40 Improved N|N
108 42 Improved N|N
109 43 Improved GTAGAATAATATTC|GTAGAATAATATTC
110 45 Improved N|N
111 47 Improved GTAGAATAATATTC|GTAGAATAATATTC
112 48 Improved GTAGAATAATATTC|GTAGAATAATATTC
113 51 Improved GTAGAATAATATTC|GTAGAATAATATTC
114 53 Improved N|N
115 56 Improved GTAGAATAATATTC|GTAGAATAATATTC
116 61 Improved GTAGAATAATATTC|GTAGAATAATATTC
117 62 Improved GTAGAATAATATTC|GTAGAATAATATTC
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved N|N
121 70 Improved GTAGAATAATATTC|GTAGAATAATATTC
122 73 Improved GTAGAATAATATTC|GTAGAATAATATTC
123 75 Improved GTAGAATAATATTC|GTAGAATAATATTC
124 88 Improved GTAGAATAATATTC|GTAGAATAATATTC
125 89 Improved N|N
126 91 Improved N|N
127 92 Improved N|N
128 93 Improved N|N
129 94 Improved GTAGAATAATATTC|GTAGAATAATATTC
130 95 Improved N|N
131 96 Improved N|N
132 97 Improved N|N
133 s1 Improved GTAGAATAATATTC|GTAGAATAATATTC
134 s36 Wild sorghum G|G
135 s2 Landrace GTAGAATAATATTC|GTAGAATAATATTC
136 s3 Improved GTAGAATAATATTC|GTAGAATAATATTC
137 s32 Improved GTAGAATAATATTC|GTAGAATAATATTC
138 s43 Weedy GTAGAATAATATTC|GTAGAATAATATTC
139 s40 Landrace N|N
140 s41 Weedy GTAGAATAATATTC|GTAGAATAATATTC
141 s39 Landrace GTAGAATAATATTC|GTAGAATAATATTC
142 s42 Landrace GTAGAATAATATTC|GTAGAATAATATTC
143 s47 Improved GTAGAATAATATTC|GTAGAATAATATTC
144 s5 Landrace GTAGAATAATATTC|GTAGAATAATATTC
145 GW102 Landrace N|N
146 GW103 Landrace N|N
147 GW104 Landrace N|N
148 GW105 Landrace GTAGAATAATATTC|GTAGAATAATATTC
149 GW16 Landrace N|N
150 GW2 Landrace GTAGAATAATATTC|GTAGAATAATATTC
151 GW34 Landrace GTAGAATAATATTC|GTAGAATAATATTC
152 GW37 Landrace GTAGAATAATATTC|GTAGAATAATATTC
153 GW58 Landrace N|N
154 GW59 Landrace GTAGAATAATATTC|GTAGAATAATATTC
155 GW9 Landrace N|N
156 s4 Weedy GTAGAATAATATTC|GTAGAATAATATTC
157 s6 Improved GTAGAATAATATTC|GTAGAATAATATTC
158 s7 Landrace GTAGAATAATATTC|GTAGAATAATATTC
159 s8 Landrace GTAGAATAATATTC|GTAGAATAATATTC
160 s9 Landrace GTAGAATAATATTC|GTAGAATAATATTC
161 J101 Landrace G|G
162 J103 Improved GTAGAATAATATTC|GTAGAATAATATTC
163 J112 Landrace N|N
164 J113 Improved GTAGAATAATATTC|GTAGAATAATATTC
165 J129 Improved N|N
166 J130 Improved GTAGAATAATATTC|GTAGAATAATATTC
167 J136 Improved GTAGAATAATATTC|GTAGAATAATATTC
168 J152 Improved N|N
169 J2 Landrace GTAGAATAATATTC|GTAGAATAATATTC
170 J20 Landrace GTAGAATAATATTC|GTAGAATAATATTC
171 J4 Landrace GTAGAATAATATTC|GTAGAATAATATTC
172 J42 Landrace GTAGAATAATATTC|GTAGAATAATATTC
173 J44 Landrace GTAGAATAATATTC|GTAGAATAATATTC
174 J49 Landrace GTAGAATAATATTC|GTAGAATAATATTC
175 J52 Landrace GTAGAATAATATTC|GTAGAATAATATTC
176 J53 Landrace GTAGAATAATATTC|GTAGAATAATATTC
177 J54 Landrace N|N
178 J57 Landrace N|N
179 J59 Landrace GTAGAATAATATTC|GTAGAATAATATTC
180 J64 Landrace GTAGAATAATATTC|GTAGAATAATATTC
181 J66 Landrace N|N
182 J67 Landrace GTAGAATAATATTC|GTAGAATAATATTC
183 J69 Landrace GTAGAATAATATTC|GTAGAATAATATTC
184 J87 Landrace GTAGAATAATATTC|GTAGAATAATATTC
185 J99 Landrace GTAGAATAATATTC|GTAGAATAATATTC
186 s45 Landrace GTAGAATAATATTC|GTAGAATAATATTC
187 s11 Improved GTAGAATAATATTC|GTAGAATAATATTC
188 s10 Improved GTAGAATAATATTC|GTAGAATAATATTC
189 s46 Improved GTAGAATAATATTC|GTAGAATAATATTC
190 s12 Improved GTAGAATAATATTC|GTAGAATAATATTC
191 s13 Landrace GTAGAATAATATTC|GTAGAATAATATTC
192 MHMD Landrace N|N
193 s14 Improved GTAGAATAATATTC|GTAGAATAATATTC
194 s15 Improved GTAGAATAATATTC|GTAGAATAATATTC
195 s34 Weedy GTAGAATAATATTC|GTAGAATAATATTC
196 s33 Wild sorghum G|G
197 s21 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
198 s16 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
199 s44 Improved GTAGAATAATATTC|GTAGAATAATATTC
200 s35 Landrace GTAGAATAATATTC|GTAGAATAATATTC
201 s31 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
202 s17 Improved GTAGAATAATATTC|GTAGAATAATATTC
203 s18 Improved GTAGAATAATATTC|GTAGAATAATATTC
204 s20 Improved GTAGAATAATATTC|GTAGAATAATATTC
205 s19 Improved *|*
206 s22 Landrace GTAGAATAATATTC|GTAGAATAATATTC
207 s23 Landrace GTAGAATAATATTC|GTAGAATAATATTC
208 s24 Landrace GTAGAATAATATTC|GTAGAATAATATTC
209 s25 Landrace GTAGAATAATATTC|GTAGAATAATATTC
210 s26 Landrace GTAGAATAATATTC|GTAGAATAATATTC
211 s27 Landrace GTAGAATAATATTC|GTAGAATAATATTC
212 s28 Landrace GTAGAATAATATTC|GTAGAATAATATTC
213 s29 Landrace GTAGAATAATATTC|GTAGAATAATATTC
214 s30 Landrace GTAGAATAATATTC|GTAGAATAATATTC
215 SL25 Wild sorghum *|*
216 SL105 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
217 SL108 Wild sorghum N|N
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum *|*
220 SL129 Wild sorghum N|N
221 SL130 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
224 SL137 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
225 SL138 Wild sorghum N|N
226 SL140 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
227 SL141 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
234 SL39 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
235 SL41 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
238 SL49 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
239 SL51 Wild sorghum N|N
240 SL53 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
241 SL62 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
242 SL83 Wild sorghum GTAGAATAATATTC|GTAGAATAATATTC
243 SL97 Landrace N|N
244 s48 Improved GTAGAATAATATTC|GTAGAATAATATTC
245 Tu13 Wild sorghum G|G
246 Tu14 Wild sorghum G|G
247 Tu30 Wild sorghum GTAGAATAATATTC|G
248 Tu5 Wild sorghum *|*
249 WSC5 Landrace GTAGAATAATATTC|GTAGAATAATATTC
250 WSC15 Landrace N|N
251 WSC19 Landrace N|N
252 WSC30 Landrace N|N
253 WSC52 Landrace GTAGAATAATATTC|GTAGAATAATATTC
254 WSC6 Landrace GTAGAATAATATTC|GTAGAATAATATTC
255 WSC61 Landrace GTAGAATAATATTC|GTAGAATAATATTC
256 WSC71 Improved GTAGAATAATATTC|GTAGAATAATATTC
257 WSC72 Landrace GTAGAATAATATTC|GTAGAATAATATTC
258 WSC79 Landrace N|N
259 WSC94 Landrace GTAGAATAATATTC|GTAGAATAATATTC
260 WSC99 Landrace N|N
261 WSC100 Landrace G|G
262 WSC104 Landrace G|G
263 WSC105 Landrace N|N
264 WSC12 Landrace GTAGAATAATATTC|GTAGAATAATATTC
265 WSC13 Landrace GTAGAATAATATTC|GTAGAATAATATTC
266 WSC16 Landrace N|N
267 WSC17 Landrace GTAGAATAATATTC|GTAGAATAATATTC
268 WSC18 Landrace GTAGAATAATATTC|GTAGAATAATATTC
269 WSC20 Landrace GTAGAATAATATTC|GTAGAATAATATTC
270 WSC24 Landrace N|N
271 WSC25 Landrace N|N
272 WSC29 Landrace GTAGAATAATATTC|GTAGAATAATATTC
273 WSC31 Landrace GTAGAATAATATTC|GTAGAATAATATTC
274 WSC32 Landrace N|N
275 WSC34 Landrace GTAGAATAATATTC|GTAGAATAATATTC
276 WSC38 Landrace GTAGAATAATATTC|GTAGAATAATATTC
277 WSC39 Improved GTAGAATAATATTC|GTAGAATAATATTC
278 WSC40 Landrace GTAGAATAATATTC|GTAGAATAATATTC
279 WSC54 Landrace G|G
280 WSC56 Landrace N|N
281 WSC59 Landrace GTAGAATAATATTC|GTAGAATAATATTC
282 WSC68 Landrace N|N
283 WSC70 Landrace GTAGAATAATATTC|GTAGAATAATATTC
284 WSC73 Landrace GTAGAATAATATTC|GTAGAATAATATTC
285 WSC81 Landrace N|N
286 WSC85 Improved N|N
287 WSC91 Landrace GTAGAATAATATTC|GTAGAATAATATTC
288 WSC93 Landrace N|N
289 WSC98 Landrace GTAGAATAATATTC|GTAGAATAATATTC

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825513 Sobic.001G000400 3_prime UTR variant |MODIFIER Sobic.001G000400.2 mRNA 4278 Sobic.001G000400.2.p
sbi33825513 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825513 Sobic.001G000300 upstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825513 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825513 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825513 Sobic.001G000400 3_prime UTR variant |MODIFIER Sobic.001G000400.1 mRNA 4571 Sobic.001G000400.1.p
sbi33825513 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser