Variation ID : sbi33825515

Variation Detail



Variation ID sbi33825515
Type INDEL
Position Chr01 24491-24503
Ref /Alleles CTAAGGTGTAGAA/ C or *
MAF *: 0.046
5' Flank TGACTTGCGGTGTAGAATAATATTCTACAC
3' Flank TAGCGCTATATATATATGGTAACTCCTAAA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved N|N
3 107 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
4 11 Improved N|N
5 110 Improved N|N
6 123 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
7 131 Improved N|N
8 132 Improved N|N
9 135 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
10 137 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
11 138 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
12 14 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
13 140 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
14 141 Improved N|N
15 144 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
16 150 Improved N|N
17 154 Improved N|N
18 159 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
19 16 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
20 161 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
21 167 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
22 168 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
23 170 Improved N|N
24 173 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
25 175 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
26 176 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
27 182 Landrace N|N
28 186 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
29 190 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
30 192 Improved *|*
31 194 Improved N|N
32 195 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
33 197 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
34 J22 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
35 J26 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
36 J5 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
37 J50 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
38 2001 Landrace N|N
39 2005 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace N|N
44 2016 Improved N|N
45 2019 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
46 202 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
47 2021 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
48 2023 Improved N|N
49 2026 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
50 2029 Improved N|N
51 2030 Landrace N|N
52 2031 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
53 2036 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
54 2037 Improved N|N
55 2038 Improved N|N
56 2039 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
57 204 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
58 2042 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
59 2043 Improved N|N
60 2048 Improved N|N
61 2049 Improved N|N
62 205 Improved N|N
63 2050 Improved N|N
64 2052 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
65 2054 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
66 2056 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
67 2059 Improved N|N
68 206 Improved N|N
69 2064 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
70 2065 Improved N|N
71 2067 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
72 2068 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
73 2069 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
74 2071 Improved N|N
75 2074 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
76 2075 Improved *|*
77 2076 Improved *|*
78 2080 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
79 2081 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
80 2082 Improved N|N
81 2086 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
82 2088 Improved *|*
83 260 Wild sorghum N|N
84 261 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
85 262 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
86 263 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
87 286 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
88 29 Improved N|N
89 3 Improved N|N
90 302546 S.propinquum N|N
91 31 Improved N|N
92 32 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
93 34 Improved N|N
94 346 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
95 348 Wild sorghum N|N
96 353 Wild sorghum N|N
97 355 Wild sorghum N|N
98 357 Wild sorghum N|N
99 364 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
100 367 Landrace N|N
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
104 377 Wild sorghum N|N
105 392 Wild sorghum N|N
106 394 Wild sorghum N|N
107 40 Improved N|N
108 42 Improved N|N
109 43 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
110 45 Improved N|N
111 47 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
112 48 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
113 51 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
114 53 Improved N|N
115 56 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
116 61 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
117 62 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved N|N
121 70 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
122 73 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
123 75 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
124 88 Improved N|N
125 89 Improved N|N
126 91 Improved N|N
127 92 Improved N|N
128 93 Improved N|N
129 94 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
130 95 Improved N|N
131 96 Improved N|N
132 97 Improved N|N
133 s1 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
134 s36 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
135 s2 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
136 s3 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
137 s32 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
138 s43 Weedy CTAAGGTGTAGAA|CTAAGGTGTAGAA
139 s40 Landrace N|N
140 s41 Weedy C|C
141 s39 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
142 s42 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
143 s47 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
144 s5 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
145 GW102 Landrace N|N
146 GW103 Landrace N|N
147 GW104 Landrace N|N
148 GW105 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
149 GW16 Landrace N|N
150 GW2 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
151 GW34 Landrace N|N
152 GW37 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
153 GW58 Landrace N|N
154 GW59 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
155 GW9 Landrace N|N
156 s4 Weedy CTAAGGTGTAGAA|CTAAGGTGTAGAA
157 s6 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
158 s7 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
159 s8 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
160 s9 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
161 J101 Landrace N|N
162 J103 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
163 J112 Landrace N|N
164 J113 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
165 J129 Improved N|N
166 J130 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
167 J136 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
168 J152 Improved N|N
169 J2 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
170 J20 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
171 J4 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
172 J42 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
173 J44 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
174 J49 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
175 J52 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
176 J53 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
177 J54 Landrace N|N
178 J57 Landrace N|N
179 J59 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
180 J64 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
181 J66 Landrace N|N
182 J67 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
183 J69 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
184 J87 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
185 J99 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
186 s45 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
187 s11 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
188 s10 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
189 s46 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
190 s12 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
191 s13 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
192 MHMD Landrace N|N
193 s14 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
194 s15 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
195 s34 Weedy CTAAGGTGTAGAA|CTAAGGTGTAGAA
196 s33 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
197 s21 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
198 s16 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
199 s44 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
200 s35 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
201 s31 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
202 s17 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
203 s18 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
204 s20 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
205 s19 Improved *|*
206 s22 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
207 s23 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
208 s24 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
209 s25 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
210 s26 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
211 s27 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
212 s28 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
213 s29 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
214 s30 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
215 SL25 Wild sorghum *|*
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum N|N
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum *|*
220 SL129 Wild sorghum N|N
221 SL130 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum N|N
224 SL137 Wild sorghum C|C
225 SL138 Wild sorghum N|N
226 SL140 Wild sorghum N|N
227 SL141 Wild sorghum N|N
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum N|N
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum C|C
232 SL36 Wild sorghum C|C
233 SL37 Wild sorghum C|C
234 SL39 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
235 SL41 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
238 SL49 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
239 SL51 Wild sorghum N|N
240 SL53 Wild sorghum N|N
241 SL62 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
242 SL83 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
243 SL97 Landrace N|N
244 s48 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum N|N
247 Tu30 Wild sorghum CTAAGGTGTAGAA|CTAAGGTGTAGAA
248 Tu5 Wild sorghum *|*
249 WSC5 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
250 WSC15 Landrace N|N
251 WSC19 Landrace N|N
252 WSC30 Landrace N|N
253 WSC52 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
254 WSC6 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
255 WSC61 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
256 WSC71 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
257 WSC72 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
258 WSC79 Landrace N|N
259 WSC94 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
260 WSC99 Landrace N|N
261 WSC100 Landrace N|N
262 WSC104 Landrace N|N
263 WSC105 Landrace N|N
264 WSC12 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
265 WSC13 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
266 WSC16 Landrace N|N
267 WSC17 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
268 WSC18 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
269 WSC20 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
270 WSC24 Landrace N|N
271 WSC25 Landrace N|N
272 WSC29 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
273 WSC31 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
274 WSC32 Landrace N|N
275 WSC34 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
276 WSC38 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
277 WSC39 Improved CTAAGGTGTAGAA|CTAAGGTGTAGAA
278 WSC40 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
279 WSC54 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
280 WSC56 Landrace N|N
281 WSC59 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
282 WSC68 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
283 WSC70 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
284 WSC73 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
285 WSC81 Landrace N|N
286 WSC85 Improved N|N
287 WSC91 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA
288 WSC93 Landrace N|N
289 WSC98 Landrace CTAAGGTGTAGAA|CTAAGGTGTAGAA

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825515 Sobic.001G000400 3_prime UTR variant |MODIFIER Sobic.001G000400.2 mRNA 4260 Sobic.001G000400.2.p
sbi33825515 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825515 Sobic.001G000300 upstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825515 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825515 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825515 Sobic.001G000400 3_prime UTR variant |MODIFIER Sobic.001G000400.1 mRNA 4553 Sobic.001G000400.1.p
sbi33825515 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser