Variation ID : sbi33825516

Variation Detail



Variation ID sbi33825516
Type INDEL
Position Chr01 24509-24509
Ref /Alleles C/ CTA or CTATA
MAF CTA: 0.317
5' Flank AATATTCTACACCTAAGGTGTAGAATAGCG
3' Flank TATATATATATGGTAACTCCTAAAAAAATC

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved N|N
3 107 Improved C|C
4 11 Improved CTATA|CTATA
5 110 Improved C|C
6 123 Landrace N|N
7 131 Improved N|N
8 132 Improved CTA|CTA
9 135 Improved CTATA|CTATA
10 137 Improved C|C
11 138 Improved C|C
12 14 Improved C|C
13 140 Improved C|C
14 141 Improved N|N
15 144 Improved CTA|CTA
16 150 Improved N|N
17 154 Improved CTA|CTA
18 159 Landrace C|C
19 16 Improved C|C
20 161 Landrace C|C
21 167 Improved C|C
22 168 Improved C|C
23 170 Improved N|N
24 173 Improved CTA|CTA
25 175 Improved N|N
26 176 Improved C|C
27 182 Landrace N|N
28 186 Improved C|C
29 190 Improved C|C
30 192 Improved C|C
31 194 Improved N|N
32 195 Improved C|C
33 197 Improved CTA|CTA
34 J22 Landrace C|C
35 J26 Landrace C|C
36 J5 Landrace C|C
37 J50 Landrace C|C
38 2001 Landrace N|N
39 2005 Improved C|C
40 2008 Improved N|N
41 2009 Landrace C|CTA
42 201 Improved N|N
43 2010 Landrace CTA|CTA
44 2016 Improved N|N
45 2019 Improved C|C
46 202 Improved C|C
47 2021 Improved C|C
48 2023 Improved C|C
49 2026 Improved C|C
50 2029 Improved CTA|CTA
51 2030 Landrace CTA|CTA
52 2031 Landrace C|C
53 2036 Improved C|C
54 2037 Improved CTA|CTA
55 2038 Improved N|N
56 2039 Improved CTA|CTA
57 204 Improved C|CTATA
58 2042 Improved C|C
59 2043 Improved N|N
60 2048 Improved N|N
61 2049 Improved N|N
62 205 Improved N|N
63 2050 Improved N|N
64 2052 Improved C|C
65 2054 Improved C|C
66 2056 Improved C|C
67 2059 Improved CTA|CTA
68 206 Improved N|N
69 2064 Improved C|C
70 2065 Improved N|N
71 2067 Improved C|C
72 2068 Improved C|C
73 2069 Improved C|C
74 2071 Improved N|N
75 2074 Improved C|C
76 2075 Improved C|C
77 2076 Improved C|C
78 2080 Improved C|C
79 2081 Improved C|C
80 2082 Improved N|N
81 2086 Improved C|C
82 2088 Improved C|C
83 260 Wild sorghum C|C
84 261 Improved C|C
85 262 Improved C|C
86 263 Improved C|C
87 286 Improved C|C
88 29 Improved CTA|CTA
89 3 Improved N|N
90 302546 S.propinquum N|N
91 31 Improved CTA|CTA
92 32 Improved C|C
93 34 Improved CTA|CTA
94 346 Landrace C|C
95 348 Wild sorghum CTA|CTA
96 353 Wild sorghum CTA|CTA
97 355 Wild sorghum CTA|CTA
98 357 Wild sorghum N|N
99 364 Wild sorghum CTA|CTA
100 367 Landrace C|C
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace C|C
104 377 Wild sorghum CTA|CTA
105 392 Wild sorghum N|N
106 394 Wild sorghum CTA|CTA
107 40 Improved N|N
108 42 Improved N|N
109 43 Improved C|C
110 45 Improved CTA|CTA
111 47 Improved C|C
112 48 Improved C|C
113 51 Improved CTA|CTA
114 53 Improved N|N
115 56 Improved C|C
116 61 Improved C|C
117 62 Improved C|C
118 66 Landrace N|N
119 67 Improved N|N
120 68 Improved N|N
121 70 Improved CTA|CTA
122 73 Improved C|C
123 75 Improved C|C
124 88 Improved CTA|CTA
125 89 Improved N|N
126 91 Improved CTA|CTA
127 92 Improved CTA|CTA
128 93 Improved N|N
129 94 Improved CTA|CTA
130 95 Improved N|N
131 96 Improved CTA|CTA
132 97 Improved N|N
133 s1 Improved C|C
134 s36 Wild sorghum CTA|CTA
135 s2 Landrace C|C
136 s3 Improved C|C
137 s32 Improved C|C
138 s43 Weedy C|C
139 s40 Landrace N|N
140 s41 Weedy CTA|CTA
141 s39 Landrace C|CTA
142 s42 Landrace CTA|CTA
143 s47 Improved C|C
144 s5 Landrace CTA|CTA
145 GW102 Landrace C|C
146 GW103 Landrace CTA|CTA
147 GW104 Landrace C|C
148 GW105 Landrace N|N
149 GW16 Landrace C|CTA
150 GW2 Landrace C|C
151 GW34 Landrace CTA|CTA
152 GW37 Landrace CTA|CTA
153 GW58 Landrace CTATA|CTATA
154 GW59 Landrace N|N
155 GW9 Landrace CTA|CTA
156 s4 Weedy CTA|CTA
157 s6 Improved C|C
158 s7 Landrace CTATA|CTATA
159 s8 Landrace C|C
160 s9 Landrace C|C
161 J101 Landrace CTA|CTA
162 J103 Improved C|C
163 J112 Landrace N|N
164 J113 Improved C|C
165 J129 Improved N|N
166 J130 Improved C|C
167 J136 Improved C|C
168 J152 Improved N|N
169 J2 Landrace C|C
170 J20 Landrace C|C
171 J4 Landrace C|C
172 J42 Landrace C|C
173 J44 Landrace C|C
174 J49 Landrace C|C
175 J52 Landrace C|C
176 J53 Landrace C|C
177 J54 Landrace N|N
178 J57 Landrace N|N
179 J59 Landrace C|C
180 J64 Landrace C|C
181 J66 Landrace N|N
182 J67 Landrace C|C
183 J69 Landrace C|C
184 J87 Landrace C|C
185 J99 Landrace C|C
186 s45 Landrace C|C
187 s11 Improved CTA|CTA
188 s10 Improved C|C
189 s46 Improved C|C
190 s12 Improved C|C
191 s13 Landrace C|C
192 MHMD Landrace CTA|CTA
193 s14 Improved C|C
194 s15 Improved C|C
195 s34 Weedy C|C
196 s33 Wild sorghum CTA|CTA
197 s21 Wild sorghum C|C
198 s16 Wild sorghum CTATA|CTATA
199 s44 Improved C|C
200 s35 Landrace CTA|CTA
201 s31 Wild sorghum CTATA|CTATA
202 s17 Improved C|C
203 s18 Improved C|C
204 s20 Improved C|C
205 s19 Improved C|C
206 s22 Landrace CTA|CTA
207 s23 Landrace C|CTA
208 s24 Landrace C|CTA
209 s25 Landrace C|C
210 s26 Landrace CTA|CTA
211 s27 Landrace CTA|CTA
212 s28 Landrace C|C
213 s29 Landrace C|C
214 s30 Landrace C|C
215 SL25 Wild sorghum CTA|CTA
216 SL105 Wild sorghum CTATA|CTATA
217 SL108 Wild sorghum CTATA|CTATA
218 SL109 Wild sorghum CTA|CTA
219 SL12 Wild sorghum CTATA|CTATA
220 SL129 Wild sorghum CTATA|CTATA
221 SL130 Wild sorghum CTA|CTA
222 SL135 Wild sorghum CTA|CTA
223 SL136 Wild sorghum CTA|CTA
224 SL137 Wild sorghum CTA|CTA
225 SL138 Wild sorghum CTATA|CTATA
226 SL140 Wild sorghum CTA|CTA
227 SL141 Wild sorghum CTATA|CTATA
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum CTA|CTA
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum CTATA|CTATA
232 SL36 Wild sorghum CTA|CTA
233 SL37 Wild sorghum CTA|CTA
234 SL39 Wild sorghum C|C
235 SL41 Wild sorghum CTA|CTA
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum C|C
238 SL49 Wild sorghum CTA|CTA
239 SL51 Wild sorghum CTA|CTA
240 SL53 Wild sorghum CTA|CTA
241 SL62 Wild sorghum CTATA|CTATA
242 SL83 Wild sorghum C|CTA
243 SL97 Landrace CTA|CTA
244 s48 Improved C|C
245 Tu13 Wild sorghum CTA|CTA
246 Tu14 Wild sorghum CTA|CTA
247 Tu30 Wild sorghum C|CTA
248 Tu5 Wild sorghum N|N
249 WSC5 Landrace C|C
250 WSC15 Landrace C|C
251 WSC19 Landrace N|N
252 WSC30 Landrace C|C
253 WSC52 Landrace C|C
254 WSC6 Landrace C|C
255 WSC61 Landrace C|C
256 WSC71 Improved C|C
257 WSC72 Landrace C|C
258 WSC79 Landrace CTA|CTA
259 WSC94 Landrace C|C
260 WSC99 Landrace N|N
261 WSC100 Landrace CTA|CTA
262 WSC104 Landrace CTA|CTA
263 WSC105 Landrace N|N
264 WSC12 Landrace C|C
265 WSC13 Landrace C|C
266 WSC16 Landrace N|N
267 WSC17 Landrace C|C
268 WSC18 Landrace C|C
269 WSC20 Landrace C|C
270 WSC24 Landrace N|N
271 WSC25 Landrace N|N
272 WSC29 Landrace C|CTA
273 WSC31 Landrace C|C
274 WSC32 Landrace N|N
275 WSC34 Landrace C|C
276 WSC38 Landrace C|C
277 WSC39 Improved C|C
278 WSC40 Landrace C|C
279 WSC54 Landrace CTA|CTA
280 WSC56 Landrace N|N
281 WSC59 Landrace CTATA|CTATA
282 WSC68 Landrace C|C
283 WSC70 Landrace C|C
284 WSC73 Landrace C|C
285 WSC81 Landrace N|N
286 WSC85 Improved N|N
287 WSC91 Landrace CTA|CTA
288 WSC93 Landrace N|N
289 WSC98 Landrace N|N

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825516 Sobic.001G000400 3_prime UTR variant |MODIFIER Sobic.001G000400.2 mRNA 4253 Sobic.001G000400.2.p
sbi33825516 Sobic.001G000400 3_prime UTR variant |MODIFIER Sobic.001G000400.2 mRNA 4253 Sobic.001G000400.2.p
sbi33825516 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825516 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825516 Sobic.001G000300 upstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825516 Sobic.001G000300 upstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825516 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825516 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825516 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825516 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825516 Sobic.001G000400 3_prime UTR variant |MODIFIER Sobic.001G000400.1 mRNA 4546 Sobic.001G000400.1.p
sbi33825516 Sobic.001G000400 3_prime UTR variant |MODIFIER Sobic.001G000400.1 mRNA 4546 Sobic.001G000400.1.p
sbi33825516 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi33825516 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser