Variation ID : sbi33825521

Variation Detail



Variation ID sbi33825521
Type INDEL
Position Chr01 26450-26452
Ref /Alleles ACT/ A
MAF A: 0.007
5' Flank GAAGTAAAATGACACCAGAGGCCATTTTTC
3' Flank CTCTTTCAGTTACTTTTTTCCTTGTGAAAA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved ACT|ACT
2 103 Improved ACT|ACT
3 107 Improved ACT|ACT
4 11 Improved ACT|ACT
5 110 Improved ACT|ACT
6 123 Landrace ACT|ACT
7 131 Improved ACT|ACT
8 132 Improved ACT|ACT
9 135 Improved ACT|ACT
10 137 Improved ACT|ACT
11 138 Improved ACT|ACT
12 14 Improved ACT|ACT
13 140 Improved ACT|ACT
14 141 Improved ACT|ACT
15 144 Improved ACT|ACT
16 150 Improved ACT|ACT
17 154 Improved ACT|ACT
18 159 Landrace ACT|ACT
19 16 Improved ACT|ACT
20 161 Landrace ACT|ACT
21 167 Improved ACT|ACT
22 168 Improved ACT|ACT
23 170 Improved N|N
24 173 Improved ACT|ACT
25 175 Improved ACT|ACT
26 176 Improved ACT|ACT
27 182 Landrace ACT|ACT
28 186 Improved ACT|ACT
29 190 Improved ACT|ACT
30 192 Improved ACT|ACT
31 194 Improved ACT|ACT
32 195 Improved ACT|ACT
33 197 Improved ACT|ACT
34 J22 Landrace ACT|ACT
35 J26 Landrace ACT|ACT
36 J5 Landrace ACT|ACT
37 J50 Landrace ACT|ACT
38 2001 Landrace ACT|ACT
39 2005 Improved ACT|ACT
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved ACT|ACT
43 2010 Landrace ACT|ACT
44 2016 Improved ACT|ACT
45 2019 Improved ACT|ACT
46 202 Improved ACT|ACT
47 2021 Improved ACT|ACT
48 2023 Improved ACT|ACT
49 2026 Improved ACT|ACT
50 2029 Improved ACT|ACT
51 2030 Landrace N|N
52 2031 Landrace ACT|ACT
53 2036 Improved ACT|ACT
54 2037 Improved ACT|ACT
55 2038 Improved ACT|ACT
56 2039 Improved ACT|ACT
57 204 Improved ACT|ACT
58 2042 Improved ACT|ACT
59 2043 Improved ACT|ACT
60 2048 Improved ACT|ACT
61 2049 Improved ACT|ACT
62 205 Improved N|N
63 2050 Improved ACT|ACT
64 2052 Improved ACT|ACT
65 2054 Improved ACT|ACT
66 2056 Improved ACT|ACT
67 2059 Improved ACT|ACT
68 206 Improved ACT|ACT
69 2064 Improved ACT|ACT
70 2065 Improved ACT|ACT
71 2067 Improved ACT|ACT
72 2068 Improved ACT|ACT
73 2069 Improved ACT|ACT
74 2071 Improved ACT|ACT
75 2074 Improved ACT|ACT
76 2075 Improved ACT|ACT
77 2076 Improved ACT|ACT
78 2080 Improved N|N
79 2081 Improved ACT|ACT
80 2082 Improved ACT|ACT
81 2086 Improved ACT|ACT
82 2088 Improved ACT|ACT
83 260 Wild sorghum ACT|ACT
84 261 Improved ACT|ACT
85 262 Improved ACT|ACT
86 263 Improved ACT|ACT
87 286 Improved ACT|ACT
88 29 Improved ACT|ACT
89 3 Improved ACT|ACT
90 302546 S.propinquum ACT|ACT
91 31 Improved ACT|ACT
92 32 Improved ACT|ACT
93 34 Improved ACT|ACT
94 346 Landrace ACT|ACT
95 348 Wild sorghum ACT|ACT
96 353 Wild sorghum ACT|ACT
97 355 Wild sorghum ACT|ACT
98 357 Wild sorghum ACT|ACT
99 364 Wild sorghum ACT|ACT
100 367 Landrace ACT|ACT
101 s37 S.propinquum ACT|ACT
102 s38 S.propinquum ACT|ACT
103 370 Landrace ACT|ACT
104 377 Wild sorghum ACT|ACT
105 392 Wild sorghum ACT|ACT
106 394 Wild sorghum ACT|ACT
107 40 Improved ACT|ACT
108 42 Improved ACT|ACT
109 43 Improved ACT|ACT
110 45 Improved ACT|ACT
111 47 Improved ACT|ACT
112 48 Improved ACT|ACT
113 51 Improved ACT|ACT
114 53 Improved ACT|ACT
115 56 Improved ACT|ACT
116 61 Improved ACT|ACT
117 62 Improved ACT|ACT
118 66 Landrace ACT|ACT
119 67 Improved ACT|ACT
120 68 Improved ACT|ACT
121 70 Improved ACT|ACT
122 73 Improved ACT|ACT
123 75 Improved ACT|ACT
124 88 Improved ACT|ACT
125 89 Improved ACT|ACT
126 91 Improved ACT|ACT
127 92 Improved ACT|ACT
128 93 Improved ACT|ACT
129 94 Improved ACT|ACT
130 95 Improved ACT|ACT
131 96 Improved ACT|ACT
132 97 Improved ACT|ACT
133 s1 Improved ACT|ACT
134 s36 Wild sorghum ACT|ACT
135 s2 Landrace ACT|ACT
136 s3 Improved ACT|ACT
137 s32 Improved ACT|ACT
138 s43 Weedy ACT|ACT
139 s40 Landrace ACT|ACT
140 s41 Weedy ACT|ACT
141 s39 Landrace ACT|ACT
142 s42 Landrace ACT|ACT
143 s47 Improved ACT|ACT
144 s5 Landrace ACT|ACT
145 GW102 Landrace ACT|ACT
146 GW103 Landrace ACT|ACT
147 GW104 Landrace N|N
148 GW105 Landrace ACT|ACT
149 GW16 Landrace ACT|ACT
150 GW2 Landrace ACT|ACT
151 GW34 Landrace ACT|ACT
152 GW37 Landrace ACT|ACT
153 GW58 Landrace ACT|ACT
154 GW59 Landrace ACT|ACT
155 GW9 Landrace ACT|ACT
156 s4 Weedy ACT|ACT
157 s6 Improved ACT|ACT
158 s7 Landrace ACT|ACT
159 s8 Landrace ACT|ACT
160 s9 Landrace ACT|ACT
161 J101 Landrace ACT|ACT
162 J103 Improved ACT|ACT
163 J112 Landrace ACT|ACT
164 J113 Improved ACT|ACT
165 J129 Improved ACT|ACT
166 J130 Improved ACT|ACT
167 J136 Improved ACT|ACT
168 J152 Improved ACT|ACT
169 J2 Landrace ACT|ACT
170 J20 Landrace ACT|ACT
171 J4 Landrace ACT|ACT
172 J42 Landrace ACT|ACT
173 J44 Landrace ACT|ACT
174 J49 Landrace ACT|ACT
175 J52 Landrace ACT|ACT
176 J53 Landrace ACT|ACT
177 J54 Landrace ACT|ACT
178 J57 Landrace ACT|ACT
179 J59 Landrace ACT|ACT
180 J64 Landrace ACT|ACT
181 J66 Landrace ACT|ACT
182 J67 Landrace ACT|ACT
183 J69 Landrace ACT|ACT
184 J87 Landrace ACT|ACT
185 J99 Landrace ACT|ACT
186 s45 Landrace ACT|ACT
187 s11 Improved ACT|ACT
188 s10 Improved ACT|ACT
189 s46 Improved ACT|ACT
190 s12 Improved ACT|ACT
191 s13 Landrace ACT|ACT
192 MHMD Landrace ACT|ACT
193 s14 Improved ACT|ACT
194 s15 Improved ACT|ACT
195 s34 Weedy ACT|ACT
196 s33 Wild sorghum ACT|ACT
197 s21 Wild sorghum ACT|ACT
198 s16 Wild sorghum ACT|ACT
199 s44 Improved ACT|ACT
200 s35 Landrace ACT|ACT
201 s31 Wild sorghum ACT|ACT
202 s17 Improved ACT|ACT
203 s18 Improved ACT|ACT
204 s20 Improved ACT|ACT
205 s19 Improved ACT|ACT
206 s22 Landrace ACT|ACT
207 s23 Landrace ACT|ACT
208 s24 Landrace ACT|ACT
209 s25 Landrace ACT|ACT
210 s26 Landrace ACT|ACT
211 s27 Landrace ACT|ACT
212 s28 Landrace ACT|ACT
213 s29 Landrace ACT|ACT
214 s30 Landrace ACT|ACT
215 SL25 Wild sorghum ACT|ACT
216 SL105 Wild sorghum ACT|ACT
217 SL108 Wild sorghum ACT|ACT
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum ACT|ACT
220 SL129 Wild sorghum ACT|ACT
221 SL130 Wild sorghum ACT|ACT
222 SL135 Wild sorghum ACT|ACT
223 SL136 Wild sorghum ACT|ACT
224 SL137 Wild sorghum ACT|ACT
225 SL138 Wild sorghum ACT|ACT
226 SL140 Wild sorghum ACT|ACT
227 SL141 Wild sorghum A|A
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum ACT|ACT
230 SL32 Wild sorghum ACT|ACT
231 SL35 Wild sorghum ACT|ACT
232 SL36 Wild sorghum ACT|ACT
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum ACT|ACT
235 SL41 Wild sorghum ACT|ACT
236 SL43 Wild sorghum ACT|ACT
237 SL47 Wild sorghum ACT|ACT
238 SL49 Wild sorghum ACT|ACT
239 SL51 Wild sorghum ACT|ACT
240 SL53 Wild sorghum ACT|ACT
241 SL62 Wild sorghum ACT|ACT
242 SL83 Wild sorghum ACT|ACT
243 SL97 Landrace ACT|ACT
244 s48 Improved ACT|ACT
245 Tu13 Wild sorghum ACT|ACT
246 Tu14 Wild sorghum ACT|ACT
247 Tu30 Wild sorghum ACT|ACT
248 Tu5 Wild sorghum ACT|ACT
249 WSC5 Landrace ACT|ACT
250 WSC15 Landrace ACT|ACT
251 WSC19 Landrace ACT|ACT
252 WSC30 Landrace ACT|ACT
253 WSC52 Landrace ACT|ACT
254 WSC6 Landrace ACT|ACT
255 WSC61 Landrace ACT|ACT
256 WSC71 Improved ACT|ACT
257 WSC72 Landrace ACT|ACT
258 WSC79 Landrace ACT|ACT
259 WSC94 Landrace ACT|ACT
260 WSC99 Landrace ACT|ACT
261 WSC100 Landrace N|N
262 WSC104 Landrace ACT|ACT
263 WSC105 Landrace ACT|ACT
264 WSC12 Landrace ACT|ACT
265 WSC13 Landrace ACT|ACT
266 WSC16 Landrace ACT|ACT
267 WSC17 Landrace ACT|ACT
268 WSC18 Landrace ACT|ACT
269 WSC20 Landrace ACT|ACT
270 WSC24 Landrace ACT|ACT
271 WSC25 Landrace ACT|ACT
272 WSC29 Landrace ACT|ACT
273 WSC31 Landrace ACT|ACT
274 WSC32 Landrace A|A
275 WSC34 Landrace ACT|ACT
276 WSC38 Landrace ACT|ACT
277 WSC39 Improved ACT|ACT
278 WSC40 Landrace ACT|ACT
279 WSC54 Landrace ACT|ACT
280 WSC56 Landrace ACT|ACT
281 WSC59 Landrace ACT|ACT
282 WSC68 Landrace ACT|ACT
283 WSC70 Landrace ACT|ACT
284 WSC73 Landrace ACT|ACT
285 WSC81 Landrace ACT|ACT
286 WSC85 Improved ACT|ACT
287 WSC91 Landrace ACT|ACT
288 WSC93 Landrace ACT|ACT
289 WSC98 Landrace ACT|ACT

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825521 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825521 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825521 Sobic.001G000300 upstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825521 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825521 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825521 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825521 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

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