Variation ID : sbi33825522

Variation Detail



Variation ID sbi33825522
Type INDEL
Position Chr01 26771-26773
Ref /Alleles TTA/ TTATATAATATATATATA or TTATA or T or TTATATATATATATA
MAF TTATA: 0.155
5' Flank ACTTCATACAGTTCATGAATTGTTTGGTCT
3' Flank TATATATATATATGTTGGTGTAAATAGTAG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved TTA|TTA
3 107 Improved TTA|TTA
4 11 Improved N|N
5 110 Improved TTA|TTA
6 123 Landrace N|N
7 131 Improved TTA|TTA
8 132 Improved TTA|TTA
9 135 Improved TTATA|TTATA
10 137 Improved TTA|TTA
11 138 Improved TTA|TTA
12 14 Improved TTA|TTA
13 140 Improved TTA|TTA
14 141 Improved N|N
15 144 Improved TTA|TTA
16 150 Improved N|N
17 154 Improved TTA|TTA
18 159 Landrace TTA|TTA
19 16 Improved TTA|TTA
20 161 Landrace TTA|TTA
21 167 Improved TTA|TTA
22 168 Improved TTA|TTA
23 170 Improved N|N
24 173 Improved N|N
25 175 Improved TTA|TTA
26 176 Improved TTA|TTA
27 182 Landrace N|N
28 186 Improved TTA|TTA
29 190 Improved TTA|TTA
30 192 Improved TTA|TTA
31 194 Improved N|N
32 195 Improved TTATA|TTATA
33 197 Improved TTATA|TTATA
34 J22 Landrace TTA|TTATA
35 J26 Landrace TTA|TTA
36 J5 Landrace TTATA|TTATA
37 J50 Landrace TTA|TTA
38 2001 Landrace N|N
39 2005 Improved N|N
40 2008 Improved TTA|TTA
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace TTA|TTA
44 2016 Improved N|N
45 2019 Improved TTA|TTA
46 202 Improved N|N
47 2021 Improved N|N
48 2023 Improved TTATA|TTATA
49 2026 Improved TTA|TTA
50 2029 Improved TTATA|TTATA
51 2030 Landrace TTA|TTA
52 2031 Landrace TTA|TTA
53 2036 Improved TTA|TTA
54 2037 Improved TTA|TTA
55 2038 Improved TTA|TTA
56 2039 Improved TTATA|TTATA
57 204 Improved TTA|TTA
58 2042 Improved TTA|TTA
59 2043 Improved N|N
60 2048 Improved N|N
61 2049 Improved TTA|TTA
62 205 Improved TTA|TTA
63 2050 Improved N|N
64 2052 Improved TTA|TTA
65 2054 Improved N|N
66 2056 Improved TTA|TTA
67 2059 Improved N|N
68 206 Improved TTA|TTA
69 2064 Improved TTATA|TTATA
70 2065 Improved TTA|TTA
71 2067 Improved N|N
72 2068 Improved N|N
73 2069 Improved TTATA|TTATA
74 2071 Improved TTA|TTA
75 2074 Improved TTATA|TTATA
76 2075 Improved TTA|TTA
77 2076 Improved TTA|TTA
78 2080 Improved N|N
79 2081 Improved TTA|TTA
80 2082 Improved TTATA|TTATA
81 2086 Improved N|N
82 2088 Improved TTA|TTA
83 260 Wild sorghum TTA|TTA
84 261 Improved TTA|TTA
85 262 Improved N|N
86 263 Improved TTA|TTA
87 286 Improved TTA|TTA
88 29 Improved TTA|TTA
89 3 Improved TTA|TTA
90 302546 S.propinquum N|N
91 31 Improved TTA|TTA
92 32 Improved TTA|TTA
93 34 Improved N|N
94 346 Landrace TTA|TTA
95 348 Wild sorghum TTA|TTA
96 353 Wild sorghum TTA|TTA
97 355 Wild sorghum TTA|TTA
98 357 Wild sorghum TTA|TTA
99 364 Wild sorghum N|N
100 367 Landrace TTA|TTA
101 s37 S.propinquum TTATATAATATATATATA|TTATATAATATATATATA
102 s38 S.propinquum TTATATAATATATATATA|TTATATAATATATATATA
103 370 Landrace N|N
104 377 Wild sorghum TTA|TTA
105 392 Wild sorghum TTA|TTA
106 394 Wild sorghum TTA|TTA
107 40 Improved TTA|TTA
108 42 Improved N|N
109 43 Improved TTA|TTA
110 45 Improved TTA|TTA
111 47 Improved N|N
112 48 Improved N|N
113 51 Improved TTA|TTA
114 53 Improved TTA|TTA
115 56 Improved TTA|TTA
116 61 Improved TTA|TTA
117 62 Improved TTA|TTA
118 66 Landrace TTA|TTA
119 67 Improved N|N
120 68 Improved TTA|TTA
121 70 Improved TTATA|TTATA
122 73 Improved TTA|TTA
123 75 Improved TTA|TTA
124 88 Improved TTA|TTA
125 89 Improved TTA|TTA
126 91 Improved N|N
127 92 Improved TTA|TTA
128 93 Improved N|N
129 94 Improved TTA|TTA
130 95 Improved N|N
131 96 Improved TTA|TTA
132 97 Improved TTA|TTA
133 s1 Improved TTA|TTA
134 s36 Wild sorghum N|N
135 s2 Landrace TTA|TTA
136 s3 Improved TTA|TTA
137 s32 Improved TTA|TTA
138 s43 Weedy TTA|TTA
139 s40 Landrace TTA|TTA
140 s41 Weedy TTA|TTA
141 s39 Landrace TTA|TTATA
142 s42 Landrace TTA|TTA
143 s47 Improved N|N
144 s5 Landrace TTA|TTA
145 GW102 Landrace TTA|TTA
146 GW103 Landrace N|N
147 GW104 Landrace TTA|TTA
148 GW105 Landrace TTATA|TTATA
149 GW16 Landrace TTATA|TTATA
150 GW2 Landrace TTA|TTATA
151 GW34 Landrace TTATA|TTATA
152 GW37 Landrace TTATA|TTATA
153 GW58 Landrace N|N
154 GW59 Landrace TTATA|TTATA
155 GW9 Landrace TTATA|TTATA
156 s4 Weedy TTA|TTATA
157 s6 Improved TTA|TTA
158 s7 Landrace TTA|TTA
159 s8 Landrace TTA|TTA
160 s9 Landrace TTA|TTA
161 J101 Landrace TTA|TTA
162 J103 Improved N|N
163 J112 Landrace N|N
164 J113 Improved TTA|TTA
165 J129 Improved TTA|TTA
166 J130 Improved TTA|TTA
167 J136 Improved TTA|TTA
168 J152 Improved TTA|TTA
169 J2 Landrace N|N
170 J20 Landrace TTA|TTA
171 J4 Landrace TTA|TTA
172 J42 Landrace TTA|TTA
173 J44 Landrace TTA|TTA
174 J49 Landrace TTATA|TTATA
175 J52 Landrace TTA|TTA
176 J53 Landrace N|N
177 J54 Landrace TTATA|TTATA
178 J57 Landrace TTA|TTA
179 J59 Landrace N|N
180 J64 Landrace TTA|TTA
181 J66 Landrace N|N
182 J67 Landrace TTA|TTA
183 J69 Landrace TTA|TTA
184 J87 Landrace N|N
185 J99 Landrace N|N
186 s45 Landrace TTA|TTA
187 s11 Improved N|N
188 s10 Improved TTA|TTA
189 s46 Improved TTA|TTA
190 s12 Improved TTA|TTA
191 s13 Landrace TTA|TTA
192 MHMD Landrace TTA|TTA
193 s14 Improved TTA|TTA
194 s15 Improved TTA|TTA
195 s34 Weedy TTA|TTA
196 s33 Wild sorghum TTA|TTA
197 s21 Wild sorghum TTA|TTA
198 s16 Wild sorghum TTA|TTA
199 s44 Improved TTA|TTA
200 s35 Landrace TTA|TTA
201 s31 Wild sorghum TTA|TTA
202 s17 Improved TTA|TTA
203 s18 Improved TTA|TTA
204 s20 Improved TTA|TTA
205 s19 Improved TTA|TTA
206 s22 Landrace TTA|TTA
207 s23 Landrace TTA|TTA
208 s24 Landrace N|N
209 s25 Landrace TTA|TTA
210 s26 Landrace TTA|TTA
211 s27 Landrace TTA|TTA
212 s28 Landrace TTA|TTA
213 s29 Landrace T|T
214 s30 Landrace TTA|TTA
215 SL25 Wild sorghum T|T
216 SL105 Wild sorghum N|N
217 SL108 Wild sorghum N|N
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum TTA|TTA
220 SL129 Wild sorghum TTATA|TTATA
221 SL130 Wild sorghum TTA|TTA
222 SL135 Wild sorghum TTA|TTA
223 SL136 Wild sorghum TTA|TTA
224 SL137 Wild sorghum TTA|TTA
225 SL138 Wild sorghum TTATATATATATATA|TTATATATATATATA
226 SL140 Wild sorghum N|N
227 SL141 Wild sorghum N|N
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum TTA|TTA
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum TTA|TTATA
232 SL36 Wild sorghum TTA|TTA
233 SL37 Wild sorghum TTA|TTA
234 SL39 Wild sorghum TTA|TTA
235 SL41 Wild sorghum N|N
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum N|N
238 SL49 Wild sorghum TTATA|TTATA
239 SL51 Wild sorghum N|N
240 SL53 Wild sorghum TTA|TTA
241 SL62 Wild sorghum TTA|TTA
242 SL83 Wild sorghum N|N
243 SL97 Landrace TTA|T
244 s48 Improved TTA|TTA
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum TTA|TTA
247 Tu30 Wild sorghum TTATA|TTATA
248 Tu5 Wild sorghum TTA|TTA
249 WSC5 Landrace TTATA|TTATA
250 WSC15 Landrace TTATA|TTATA
251 WSC19 Landrace TTA|TTA
252 WSC30 Landrace TTA|TTA
253 WSC52 Landrace TTA|TTA
254 WSC6 Landrace TTATA|TTATA
255 WSC61 Landrace N|N
256 WSC71 Improved TTA|TTA
257 WSC72 Landrace TTA|TTA
258 WSC79 Landrace TTA|TTA
259 WSC94 Landrace TTA|TTA
260 WSC99 Landrace TTA|TTA
261 WSC100 Landrace TTA|TTA
262 WSC104 Landrace TTA|TTA
263 WSC105 Landrace TTA|TTA
264 WSC12 Landrace TTA|TTA
265 WSC13 Landrace TTA|TTA
266 WSC16 Landrace N|N
267 WSC17 Landrace TTA|TTA
268 WSC18 Landrace TTA|TTA
269 WSC20 Landrace TTA|TTA
270 WSC24 Landrace TTA|TTA
271 WSC25 Landrace TTATA|TTATA
272 WSC29 Landrace TTATA|TTATA
273 WSC31 Landrace TTA|TTA
274 WSC32 Landrace TTATA|TTATA
275 WSC34 Landrace TTA|TTA
276 WSC38 Landrace TTA|TTA
277 WSC39 Improved TTATA|TTATA
278 WSC40 Landrace TTA|TTA
279 WSC54 Landrace TTA|TTA
280 WSC56 Landrace TTA|TTA
281 WSC59 Landrace TTATA|TTATA
282 WSC68 Landrace TTATA|TTATA
283 WSC70 Landrace TTA|TTA
284 WSC73 Landrace TTA|TTA
285 WSC81 Landrace TTA|TTA
286 WSC85 Improved TTA|TTA
287 WSC91 Landrace TTA|TTA
288 WSC93 Landrace TTA|TTA
289 WSC98 Landrace N|N

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825522 Sobic.001G000300 upstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825522 Sobic.001G000300 upstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825522 Sobic.001G000300 upstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825522 Sobic.001G000300 upstream gene variant |MODIFIER Sobic.001G000300.2 mRNA Sobic.001G000300.2.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p
sbi33825522 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

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