sorgsd

Variation ID : sbi33825533

Variation Detail

Variation ID	sbi33825533
Type	INDEL
Position	Chr01 28043-28051
Ref /Alleles	CCACTGCAG/ C
MAF	C: 0.004
5' Flank	CATCTGTGAGTAAGATGGTGGAAGCGATGC
3' Flank	CACAGATATGGAAGACGCTGAGTAATATGT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	CCACTGCAG\|CCACTGCAG
2	103	Improved	CCACTGCAG\|CCACTGCAG
3	107	Improved	CCACTGCAG\|CCACTGCAG
4	11	Improved	N\|N
5	110	Improved	CCACTGCAG\|CCACTGCAG
6	123	Landrace	CCACTGCAG\|CCACTGCAG
7	131	Improved	CCACTGCAG\|CCACTGCAG
8	132	Improved	CCACTGCAG\|CCACTGCAG
9	135	Improved	CCACTGCAG\|CCACTGCAG
10	137	Improved	CCACTGCAG\|CCACTGCAG
11	138	Improved	CCACTGCAG\|CCACTGCAG
12	14	Improved	CCACTGCAG\|CCACTGCAG
13	140	Improved	CCACTGCAG\|CCACTGCAG
14	141	Improved	CCACTGCAG\|CCACTGCAG
15	144	Improved	CCACTGCAG\|CCACTGCAG
16	150	Improved	CCACTGCAG\|CCACTGCAG
17	154	Improved	CCACTGCAG\|CCACTGCAG
18	159	Landrace	CCACTGCAG\|CCACTGCAG
19	16	Improved	CCACTGCAG\|CCACTGCAG
20	161	Landrace	CCACTGCAG\|CCACTGCAG
21	167	Improved	CCACTGCAG\|CCACTGCAG
22	168	Improved	CCACTGCAG\|CCACTGCAG
23	170	Improved	CCACTGCAG\|CCACTGCAG
24	173	Improved	CCACTGCAG\|CCACTGCAG
25	175	Improved	CCACTGCAG\|CCACTGCAG
26	176	Improved	CCACTGCAG\|CCACTGCAG
27	182	Landrace	CCACTGCAG\|CCACTGCAG
28	186	Improved	CCACTGCAG\|CCACTGCAG
29	190	Improved	CCACTGCAG\|CCACTGCAG
30	192	Improved	CCACTGCAG\|CCACTGCAG
31	194	Improved	CCACTGCAG\|CCACTGCAG
32	195	Improved	CCACTGCAG\|CCACTGCAG
33	197	Improved	CCACTGCAG\|CCACTGCAG
34	J22	Landrace	CCACTGCAG\|CCACTGCAG
35	J26	Landrace	CCACTGCAG\|CCACTGCAG
36	J5	Landrace	CCACTGCAG\|CCACTGCAG
37	J50	Landrace	CCACTGCAG\|CCACTGCAG
38	2001	Landrace	CCACTGCAG\|CCACTGCAG
39	2005	Improved	N\|N
40	2008	Improved	CCACTGCAG\|CCACTGCAG
41	2009	Landrace	CCACTGCAG\|CCACTGCAG
42	201	Improved	CCACTGCAG\|CCACTGCAG
43	2010	Landrace	CCACTGCAG\|CCACTGCAG
44	2016	Improved	CCACTGCAG\|CCACTGCAG
45	2019	Improved	CCACTGCAG\|CCACTGCAG
46	202	Improved	CCACTGCAG\|CCACTGCAG
47	2021	Improved	CCACTGCAG\|CCACTGCAG
48	2023	Improved	CCACTGCAG\|CCACTGCAG
49	2026	Improved	CCACTGCAG\|CCACTGCAG
50	2029	Improved	N\|N
51	2030	Landrace	CCACTGCAG\|CCACTGCAG
52	2031	Landrace	CCACTGCAG\|CCACTGCAG
53	2036	Improved	CCACTGCAG\|CCACTGCAG
54	2037	Improved	CCACTGCAG\|CCACTGCAG
55	2038	Improved	CCACTGCAG\|CCACTGCAG
56	2039	Improved	CCACTGCAG\|CCACTGCAG
57	204	Improved	CCACTGCAG\|CCACTGCAG
58	2042	Improved	CCACTGCAG\|CCACTGCAG
59	2043	Improved	CCACTGCAG\|CCACTGCAG
60	2048	Improved	CCACTGCAG\|CCACTGCAG
61	2049	Improved	CCACTGCAG\|CCACTGCAG
62	205	Improved	CCACTGCAG\|CCACTGCAG
63	2050	Improved	CCACTGCAG\|CCACTGCAG
64	2052	Improved	CCACTGCAG\|CCACTGCAG
65	2054	Improved	CCACTGCAG\|CCACTGCAG
66	2056	Improved	CCACTGCAG\|CCACTGCAG
67	2059	Improved	CCACTGCAG\|CCACTGCAG
68	206	Improved	CCACTGCAG\|CCACTGCAG
69	2064	Improved	CCACTGCAG\|CCACTGCAG
70	2065	Improved	CCACTGCAG\|CCACTGCAG
71	2067	Improved	N\|N
72	2068	Improved	CCACTGCAG\|CCACTGCAG
73	2069	Improved	CCACTGCAG\|CCACTGCAG
74	2071	Improved	CCACTGCAG\|CCACTGCAG
75	2074	Improved	CCACTGCAG\|CCACTGCAG
76	2075	Improved	CCACTGCAG\|CCACTGCAG
77	2076	Improved	CCACTGCAG\|CCACTGCAG
78	2080	Improved	CCACTGCAG\|CCACTGCAG
79	2081	Improved	CCACTGCAG\|CCACTGCAG
80	2082	Improved	CCACTGCAG\|CCACTGCAG
81	2086	Improved	CCACTGCAG\|CCACTGCAG
82	2088	Improved	N\|N
83	260	Wild sorghum	CCACTGCAG\|CCACTGCAG
84	261	Improved	CCACTGCAG\|CCACTGCAG
85	262	Improved	CCACTGCAG\|CCACTGCAG
86	263	Improved	CCACTGCAG\|CCACTGCAG
87	286	Improved	CCACTGCAG\|CCACTGCAG
88	29	Improved	CCACTGCAG\|CCACTGCAG
89	3	Improved	CCACTGCAG\|CCACTGCAG
90	302546	S.propinquum	CCACTGCAG\|CCACTGCAG
91	31	Improved	CCACTGCAG\|CCACTGCAG
92	32	Improved	CCACTGCAG\|CCACTGCAG
93	34	Improved	CCACTGCAG\|CCACTGCAG
94	346	Landrace	CCACTGCAG\|CCACTGCAG
95	348	Wild sorghum	CCACTGCAG\|CCACTGCAG
96	353	Wild sorghum	CCACTGCAG\|CCACTGCAG
97	355	Wild sorghum	CCACTGCAG\|CCACTGCAG
98	357	Wild sorghum	CCACTGCAG\|CCACTGCAG
99	364	Wild sorghum	CCACTGCAG\|CCACTGCAG
100	367	Landrace	CCACTGCAG\|CCACTGCAG
101	s37	S.propinquum	CCACTGCAG\|CCACTGCAG
102	s38	S.propinquum	CCACTGCAG\|CCACTGCAG
103	370	Landrace	CCACTGCAG\|CCACTGCAG
104	377	Wild sorghum	CCACTGCAG\|CCACTGCAG
105	392	Wild sorghum	CCACTGCAG\|CCACTGCAG
106	394	Wild sorghum	CCACTGCAG\|CCACTGCAG
107	40	Improved	CCACTGCAG\|CCACTGCAG
108	42	Improved	CCACTGCAG\|CCACTGCAG
109	43	Improved	CCACTGCAG\|CCACTGCAG
110	45	Improved	CCACTGCAG\|CCACTGCAG
111	47	Improved	CCACTGCAG\|CCACTGCAG
112	48	Improved	CCACTGCAG\|CCACTGCAG
113	51	Improved	CCACTGCAG\|CCACTGCAG
114	53	Improved	CCACTGCAG\|CCACTGCAG
115	56	Improved	CCACTGCAG\|CCACTGCAG
116	61	Improved	CCACTGCAG\|CCACTGCAG
117	62	Improved	CCACTGCAG\|CCACTGCAG
118	66	Landrace	CCACTGCAG\|CCACTGCAG
119	67	Improved	CCACTGCAG\|CCACTGCAG
120	68	Improved	CCACTGCAG\|CCACTGCAG
121	70	Improved	CCACTGCAG\|CCACTGCAG
122	73	Improved	CCACTGCAG\|CCACTGCAG
123	75	Improved	CCACTGCAG\|CCACTGCAG
124	88	Improved	CCACTGCAG\|CCACTGCAG
125	89	Improved	CCACTGCAG\|CCACTGCAG
126	91	Improved	CCACTGCAG\|CCACTGCAG
127	92	Improved	CCACTGCAG\|CCACTGCAG
128	93	Improved	CCACTGCAG\|CCACTGCAG
129	94	Improved	CCACTGCAG\|CCACTGCAG
130	95	Improved	CCACTGCAG\|CCACTGCAG
131	96	Improved	CCACTGCAG\|CCACTGCAG
132	97	Improved	CCACTGCAG\|CCACTGCAG
133	s1	Improved	CCACTGCAG\|CCACTGCAG
134	s36	Wild sorghum	CCACTGCAG\|CCACTGCAG
135	s2	Landrace	CCACTGCAG\|CCACTGCAG
136	s3	Improved	CCACTGCAG\|CCACTGCAG
137	s32	Improved	CCACTGCAG\|CCACTGCAG
138	s43	Weedy	CCACTGCAG\|CCACTGCAG
139	s40	Landrace	CCACTGCAG\|CCACTGCAG
140	s41	Weedy	CCACTGCAG\|CCACTGCAG
141	s39	Landrace	CCACTGCAG\|CCACTGCAG
142	s42	Landrace	CCACTGCAG\|CCACTGCAG
143	s47	Improved	CCACTGCAG\|CCACTGCAG
144	s5	Landrace	CCACTGCAG\|CCACTGCAG
145	GW102	Landrace	CCACTGCAG\|CCACTGCAG
146	GW103	Landrace	CCACTGCAG\|CCACTGCAG
147	GW104	Landrace	CCACTGCAG\|CCACTGCAG
148	GW105	Landrace	CCACTGCAG\|CCACTGCAG
149	GW16	Landrace	CCACTGCAG\|CCACTGCAG
150	GW2	Landrace	CCACTGCAG\|CCACTGCAG
151	GW34	Landrace	CCACTGCAG\|CCACTGCAG
152	GW37	Landrace	CCACTGCAG\|CCACTGCAG
153	GW58	Landrace	CCACTGCAG\|CCACTGCAG
154	GW59	Landrace	N\|N
155	GW9	Landrace	CCACTGCAG\|CCACTGCAG
156	s4	Weedy	CCACTGCAG\|CCACTGCAG
157	s6	Improved	CCACTGCAG\|CCACTGCAG
158	s7	Landrace	CCACTGCAG\|CCACTGCAG
159	s8	Landrace	CCACTGCAG\|CCACTGCAG
160	s9	Landrace	CCACTGCAG\|CCACTGCAG
161	J101	Landrace	CCACTGCAG\|CCACTGCAG
162	J103	Improved	CCACTGCAG\|CCACTGCAG
163	J112	Landrace	CCACTGCAG\|CCACTGCAG
164	J113	Improved	CCACTGCAG\|CCACTGCAG
165	J129	Improved	CCACTGCAG\|CCACTGCAG
166	J130	Improved	CCACTGCAG\|CCACTGCAG
167	J136	Improved	CCACTGCAG\|CCACTGCAG
168	J152	Improved	CCACTGCAG\|CCACTGCAG
169	J2	Landrace	CCACTGCAG\|CCACTGCAG
170	J20	Landrace	CCACTGCAG\|CCACTGCAG
171	J4	Landrace	CCACTGCAG\|CCACTGCAG
172	J42	Landrace	CCACTGCAG\|CCACTGCAG
173	J44	Landrace	CCACTGCAG\|CCACTGCAG
174	J49	Landrace	CCACTGCAG\|CCACTGCAG
175	J52	Landrace	CCACTGCAG\|CCACTGCAG
176	J53	Landrace	CCACTGCAG\|CCACTGCAG
177	J54	Landrace	CCACTGCAG\|CCACTGCAG
178	J57	Landrace	CCACTGCAG\|CCACTGCAG
179	J59	Landrace	CCACTGCAG\|CCACTGCAG
180	J64	Landrace	N\|N
181	J66	Landrace	CCACTGCAG\|CCACTGCAG
182	J67	Landrace	CCACTGCAG\|CCACTGCAG
183	J69	Landrace	CCACTGCAG\|CCACTGCAG
184	J87	Landrace	CCACTGCAG\|CCACTGCAG
185	J99	Landrace	CCACTGCAG\|CCACTGCAG
186	s45	Landrace	CCACTGCAG\|CCACTGCAG
187	s11	Improved	CCACTGCAG\|CCACTGCAG
188	s10	Improved	CCACTGCAG\|CCACTGCAG
189	s46	Improved	CCACTGCAG\|CCACTGCAG
190	s12	Improved	CCACTGCAG\|CCACTGCAG
191	s13	Landrace	CCACTGCAG\|CCACTGCAG
192	MHMD	Landrace	CCACTGCAG\|CCACTGCAG
193	s14	Improved	CCACTGCAG\|CCACTGCAG
194	s15	Improved	CCACTGCAG\|CCACTGCAG
195	s34	Weedy	CCACTGCAG\|CCACTGCAG
196	s33	Wild sorghum	CCACTGCAG\|CCACTGCAG
197	s21	Wild sorghum	CCACTGCAG\|CCACTGCAG
198	s16	Wild sorghum	CCACTGCAG\|CCACTGCAG
199	s44	Improved	CCACTGCAG\|CCACTGCAG
200	s35	Landrace	CCACTGCAG\|CCACTGCAG
201	s31	Wild sorghum	CCACTGCAG\|CCACTGCAG
202	s17	Improved	CCACTGCAG\|CCACTGCAG
203	s18	Improved	CCACTGCAG\|CCACTGCAG
204	s20	Improved	CCACTGCAG\|CCACTGCAG
205	s19	Improved	CCACTGCAG\|CCACTGCAG
206	s22	Landrace	CCACTGCAG\|CCACTGCAG
207	s23	Landrace	CCACTGCAG\|CCACTGCAG
208	s24	Landrace	CCACTGCAG\|CCACTGCAG
209	s25	Landrace	CCACTGCAG\|CCACTGCAG
210	s26	Landrace	CCACTGCAG\|CCACTGCAG
211	s27	Landrace	CCACTGCAG\|CCACTGCAG
212	s28	Landrace	CCACTGCAG\|CCACTGCAG
213	s29	Landrace	CCACTGCAG\|CCACTGCAG
214	s30	Landrace	CCACTGCAG\|CCACTGCAG
215	SL25	Wild sorghum	CCACTGCAG\|CCACTGCAG
216	SL105	Wild sorghum	C\|C
217	SL108	Wild sorghum	N\|N
218	SL109	Wild sorghum	CCACTGCAG\|CCACTGCAG
219	SL12	Wild sorghum	CCACTGCAG\|CCACTGCAG
220	SL129	Wild sorghum	CCACTGCAG\|CCACTGCAG
221	SL130	Wild sorghum	CCACTGCAG\|CCACTGCAG
222	SL135	Wild sorghum	CCACTGCAG\|CCACTGCAG
223	SL136	Wild sorghum	CCACTGCAG\|CCACTGCAG
224	SL137	Wild sorghum	CCACTGCAG\|CCACTGCAG
225	SL138	Wild sorghum	CCACTGCAG\|CCACTGCAG
226	SL140	Wild sorghum	CCACTGCAG\|CCACTGCAG
227	SL141	Wild sorghum	CCACTGCAG\|CCACTGCAG
228	SL19	Wild sorghum	CCACTGCAG\|CCACTGCAG
229	SL28	Wild sorghum	CCACTGCAG\|CCACTGCAG
230	SL32	Wild sorghum	CCACTGCAG\|CCACTGCAG
231	SL35	Wild sorghum	CCACTGCAG\|CCACTGCAG
232	SL36	Wild sorghum	CCACTGCAG\|CCACTGCAG
233	SL37	Wild sorghum	CCACTGCAG\|CCACTGCAG
234	SL39	Wild sorghum	CCACTGCAG\|CCACTGCAG
235	SL41	Wild sorghum	CCACTGCAG\|CCACTGCAG
236	SL43	Wild sorghum	CCACTGCAG\|CCACTGCAG
237	SL47	Wild sorghum	CCACTGCAG\|CCACTGCAG
238	SL49	Wild sorghum	CCACTGCAG\|CCACTGCAG
239	SL51	Wild sorghum	CCACTGCAG\|CCACTGCAG
240	SL53	Wild sorghum	CCACTGCAG\|CCACTGCAG
241	SL62	Wild sorghum	CCACTGCAG\|CCACTGCAG
242	SL83	Wild sorghum	CCACTGCAG\|CCACTGCAG
243	SL97	Landrace	CCACTGCAG\|CCACTGCAG
244	s48	Improved	CCACTGCAG\|CCACTGCAG
245	Tu13	Wild sorghum	CCACTGCAG\|CCACTGCAG
246	Tu14	Wild sorghum	CCACTGCAG\|CCACTGCAG
247	Tu30	Wild sorghum	CCACTGCAG\|CCACTGCAG
248	Tu5	Wild sorghum	N\|N
249	WSC5	Landrace	CCACTGCAG\|CCACTGCAG
250	WSC15	Landrace	CCACTGCAG\|CCACTGCAG
251	WSC19	Landrace	CCACTGCAG\|CCACTGCAG
252	WSC30	Landrace	CCACTGCAG\|CCACTGCAG
253	WSC52	Landrace	CCACTGCAG\|CCACTGCAG
254	WSC6	Landrace	N\|N
255	WSC61	Landrace	CCACTGCAG\|CCACTGCAG
256	WSC71	Improved	CCACTGCAG\|CCACTGCAG
257	WSC72	Landrace	CCACTGCAG\|CCACTGCAG
258	WSC79	Landrace	N\|N
259	WSC94	Landrace	CCACTGCAG\|CCACTGCAG
260	WSC99	Landrace	CCACTGCAG\|CCACTGCAG
261	WSC100	Landrace	CCACTGCAG\|CCACTGCAG
262	WSC104	Landrace	CCACTGCAG\|CCACTGCAG
263	WSC105	Landrace	N\|N
264	WSC12	Landrace	CCACTGCAG\|CCACTGCAG
265	WSC13	Landrace	CCACTGCAG\|CCACTGCAG
266	WSC16	Landrace	CCACTGCAG\|CCACTGCAG
267	WSC17	Landrace	CCACTGCAG\|CCACTGCAG
268	WSC18	Landrace	CCACTGCAG\|CCACTGCAG
269	WSC20	Landrace	CCACTGCAG\|CCACTGCAG
270	WSC24	Landrace	CCACTGCAG\|CCACTGCAG
271	WSC25	Landrace	CCACTGCAG\|CCACTGCAG
272	WSC29	Landrace	CCACTGCAG\|CCACTGCAG
273	WSC31	Landrace	CCACTGCAG\|CCACTGCAG
274	WSC32	Landrace	CCACTGCAG\|CCACTGCAG
275	WSC34	Landrace	CCACTGCAG\|CCACTGCAG
276	WSC38	Landrace	CCACTGCAG\|CCACTGCAG
277	WSC39	Improved	CCACTGCAG\|CCACTGCAG
278	WSC40	Landrace	CCACTGCAG\|CCACTGCAG
279	WSC54	Landrace	CCACTGCAG\|CCACTGCAG
280	WSC56	Landrace	CCACTGCAG\|CCACTGCAG
281	WSC59	Landrace	CCACTGCAG\|CCACTGCAG
282	WSC68	Landrace	CCACTGCAG\|CCACTGCAG
283	WSC70	Landrace	CCACTGCAG\|CCACTGCAG
284	WSC73	Landrace	CCACTGCAG\|CCACTGCAG
285	WSC81	Landrace	CCACTGCAG\|CCACTGCAG
286	WSC85	Improved	CCACTGCAG\|CCACTGCAG
287	WSC91	Landrace	CCACTGCAG\|CCACTGCAG
288	WSC93	Landrace	N\|N
289	WSC98	Landrace	CCACTGCAG\|CCACTGCAG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825533	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825533	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825533	Sobic.001G000300	upstream gene variant \|MODIFIER	Sobic.001G000300.2	mRNA			Sobic.001G000300.2.p
sbi33825533	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825533	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825533	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825533	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

Genome Browser