Variation ID : sbi33825544

Variation Detail



Variation ID sbi33825544
Type INDEL
Position Chr01 29577-29579
Ref /Alleles AGG/ A
MAF A: 0.004
5' Flank CATACTCGTATGACGTGGATCTACATGCTG
3' Flank GGTAAGCATGAAGTTTTCCGATGTTTCCAA

Individual Alleles

id Sample Id Type Alleles
1 101 Improved AGG|AGG
2 103 Improved AGG|AGG
3 107 Improved AGG|AGG
4 11 Improved AGG|AGG
5 110 Improved AGG|AGG
6 123 Landrace AGG|AGG
7 131 Improved AGG|AGG
8 132 Improved AGG|AGG
9 135 Improved AGG|AGG
10 137 Improved AGG|AGG
11 138 Improved AGG|AGG
12 14 Improved AGG|AGG
13 140 Improved AGG|AGG
14 141 Improved AGG|AGG
15 144 Improved AGG|AGG
16 150 Improved AGG|AGG
17 154 Improved AGG|AGG
18 159 Landrace AGG|AGG
19 16 Improved AGG|AGG
20 161 Landrace AGG|AGG
21 167 Improved AGG|AGG
22 168 Improved AGG|AGG
23 170 Improved AGG|AGG
24 173 Improved AGG|AGG
25 175 Improved N|N
26 176 Improved AGG|AGG
27 182 Landrace AGG|AGG
28 186 Improved AGG|AGG
29 190 Improved AGG|AGG
30 192 Improved AGG|AGG
31 194 Improved AGG|AGG
32 195 Improved AGG|AGG
33 197 Improved AGG|AGG
34 J22 Landrace AGG|AGG
35 J26 Landrace AGG|AGG
36 J5 Landrace AGG|AGG
37 J50 Landrace AGG|AGG
38 2001 Landrace AGG|AGG
39 2005 Improved AGG|AGG
40 2008 Improved AGG|AGG
41 2009 Landrace AGG|AGG
42 201 Improved AGG|AGG
43 2010 Landrace AGG|AGG
44 2016 Improved AGG|AGG
45 2019 Improved AGG|AGG
46 202 Improved AGG|AGG
47 2021 Improved AGG|AGG
48 2023 Improved AGG|AGG
49 2026 Improved AGG|AGG
50 2029 Improved AGG|AGG
51 2030 Landrace AGG|AGG
52 2031 Landrace AGG|AGG
53 2036 Improved AGG|AGG
54 2037 Improved AGG|AGG
55 2038 Improved AGG|AGG
56 2039 Improved AGG|AGG
57 204 Improved AGG|AGG
58 2042 Improved AGG|AGG
59 2043 Improved AGG|AGG
60 2048 Improved AGG|AGG
61 2049 Improved AGG|AGG
62 205 Improved AGG|AGG
63 2050 Improved AGG|AGG
64 2052 Improved AGG|AGG
65 2054 Improved AGG|AGG
66 2056 Improved AGG|AGG
67 2059 Improved AGG|AGG
68 206 Improved AGG|AGG
69 2064 Improved AGG|AGG
70 2065 Improved AGG|AGG
71 2067 Improved AGG|AGG
72 2068 Improved AGG|AGG
73 2069 Improved AGG|AGG
74 2071 Improved AGG|AGG
75 2074 Improved AGG|AGG
76 2075 Improved AGG|AGG
77 2076 Improved AGG|AGG
78 2080 Improved AGG|AGG
79 2081 Improved AGG|AGG
80 2082 Improved AGG|AGG
81 2086 Improved AGG|AGG
82 2088 Improved AGG|AGG
83 260 Wild sorghum AGG|AGG
84 261 Improved AGG|AGG
85 262 Improved AGG|AGG
86 263 Improved AGG|AGG
87 286 Improved AGG|AGG
88 29 Improved AGG|AGG
89 3 Improved AGG|AGG
90 302546 S.propinquum N|N
91 31 Improved AGG|AGG
92 32 Improved AGG|AGG
93 34 Improved AGG|AGG
94 346 Landrace AGG|AGG
95 348 Wild sorghum AGG|AGG
96 353 Wild sorghum AGG|AGG
97 355 Wild sorghum N|N
98 357 Wild sorghum AGG|AGG
99 364 Wild sorghum AGG|AGG
100 367 Landrace AGG|AGG
101 s37 S.propinquum AGG|AGG
102 s38 S.propinquum AGG|AGG
103 370 Landrace AGG|AGG
104 377 Wild sorghum AGG|AGG
105 392 Wild sorghum AGG|AGG
106 394 Wild sorghum AGG|AGG
107 40 Improved AGG|AGG
108 42 Improved AGG|AGG
109 43 Improved AGG|AGG
110 45 Improved AGG|AGG
111 47 Improved AGG|AGG
112 48 Improved AGG|AGG
113 51 Improved AGG|AGG
114 53 Improved AGG|AGG
115 56 Improved AGG|AGG
116 61 Improved AGG|AGG
117 62 Improved AGG|AGG
118 66 Landrace AGG|AGG
119 67 Improved AGG|AGG
120 68 Improved AGG|AGG
121 70 Improved AGG|AGG
122 73 Improved N|N
123 75 Improved AGG|AGG
124 88 Improved AGG|AGG
125 89 Improved AGG|AGG
126 91 Improved AGG|AGG
127 92 Improved AGG|AGG
128 93 Improved AGG|AGG
129 94 Improved AGG|AGG
130 95 Improved AGG|AGG
131 96 Improved AGG|AGG
132 97 Improved AGG|AGG
133 s1 Improved AGG|AGG
134 s36 Wild sorghum AGG|AGG
135 s2 Landrace AGG|AGG
136 s3 Improved AGG|AGG
137 s32 Improved AGG|AGG
138 s43 Weedy AGG|AGG
139 s40 Landrace AGG|AGG
140 s41 Weedy AGG|AGG
141 s39 Landrace AGG|AGG
142 s42 Landrace AGG|AGG
143 s47 Improved AGG|AGG
144 s5 Landrace AGG|AGG
145 GW102 Landrace AGG|AGG
146 GW103 Landrace AGG|AGG
147 GW104 Landrace AGG|AGG
148 GW105 Landrace AGG|AGG
149 GW16 Landrace AGG|AGG
150 GW2 Landrace AGG|AGG
151 GW34 Landrace AGG|AGG
152 GW37 Landrace AGG|AGG
153 GW58 Landrace AGG|AGG
154 GW59 Landrace AGG|AGG
155 GW9 Landrace AGG|AGG
156 s4 Weedy AGG|AGG
157 s6 Improved AGG|AGG
158 s7 Landrace AGG|AGG
159 s8 Landrace AGG|AGG
160 s9 Landrace AGG|AGG
161 J101 Landrace AGG|AGG
162 J103 Improved N|N
163 J112 Landrace AGG|AGG
164 J113 Improved AGG|AGG
165 J129 Improved AGG|AGG
166 J130 Improved AGG|AGG
167 J136 Improved AGG|AGG
168 J152 Improved AGG|AGG
169 J2 Landrace AGG|AGG
170 J20 Landrace AGG|AGG
171 J4 Landrace AGG|AGG
172 J42 Landrace AGG|AGG
173 J44 Landrace AGG|AGG
174 J49 Landrace AGG|AGG
175 J52 Landrace AGG|AGG
176 J53 Landrace AGG|AGG
177 J54 Landrace AGG|AGG
178 J57 Landrace AGG|AGG
179 J59 Landrace AGG|AGG
180 J64 Landrace AGG|AGG
181 J66 Landrace AGG|AGG
182 J67 Landrace N|N
183 J69 Landrace AGG|AGG
184 J87 Landrace AGG|AGG
185 J99 Landrace AGG|AGG
186 s45 Landrace AGG|AGG
187 s11 Improved AGG|AGG
188 s10 Improved AGG|AGG
189 s46 Improved AGG|AGG
190 s12 Improved AGG|AGG
191 s13 Landrace AGG|AGG
192 MHMD Landrace N|N
193 s14 Improved AGG|AGG
194 s15 Improved AGG|AGG
195 s34 Weedy AGG|AGG
196 s33 Wild sorghum AGG|AGG
197 s21 Wild sorghum AGG|AGG
198 s16 Wild sorghum AGG|AGG
199 s44 Improved AGG|AGG
200 s35 Landrace AGG|AGG
201 s31 Wild sorghum AGG|AGG
202 s17 Improved AGG|AGG
203 s18 Improved AGG|AGG
204 s20 Improved AGG|AGG
205 s19 Improved AGG|AGG
206 s22 Landrace AGG|AGG
207 s23 Landrace AGG|AGG
208 s24 Landrace AGG|AGG
209 s25 Landrace AGG|AGG
210 s26 Landrace AGG|AGG
211 s27 Landrace AGG|AGG
212 s28 Landrace AGG|AGG
213 s29 Landrace AGG|AGG
214 s30 Landrace AGG|AGG
215 SL25 Wild sorghum AGG|AGG
216 SL105 Wild sorghum AGG|AGG
217 SL108 Wild sorghum AGG|AGG
218 SL109 Wild sorghum AGG|AGG
219 SL12 Wild sorghum AGG|AGG
220 SL129 Wild sorghum AGG|AGG
221 SL130 Wild sorghum N|N
222 SL135 Wild sorghum N|N
223 SL136 Wild sorghum N|N
224 SL137 Wild sorghum AGG|AGG
225 SL138 Wild sorghum AGG|AGG
226 SL140 Wild sorghum AGG|AGG
227 SL141 Wild sorghum N|N
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum AGG|AGG
230 SL32 Wild sorghum AGG|AGG
231 SL35 Wild sorghum AGG|AGG
232 SL36 Wild sorghum AGG|AGG
233 SL37 Wild sorghum AGG|AGG
234 SL39 Wild sorghum AGG|AGG
235 SL41 Wild sorghum AGG|AGG
236 SL43 Wild sorghum N|N
237 SL47 Wild sorghum AGG|AGG
238 SL49 Wild sorghum AGG|AGG
239 SL51 Wild sorghum AGG|AGG
240 SL53 Wild sorghum AGG|AGG
241 SL62 Wild sorghum A|A
242 SL83 Wild sorghum AGG|AGG
243 SL97 Landrace AGG|AGG
244 s48 Improved AGG|AGG
245 Tu13 Wild sorghum AGG|AGG
246 Tu14 Wild sorghum AGG|AGG
247 Tu30 Wild sorghum AGG|AGG
248 Tu5 Wild sorghum AGG|AGG
249 WSC5 Landrace AGG|AGG
250 WSC15 Landrace AGG|AGG
251 WSC19 Landrace AGG|AGG
252 WSC30 Landrace AGG|AGG
253 WSC52 Landrace AGG|AGG
254 WSC6 Landrace AGG|AGG
255 WSC61 Landrace AGG|AGG
256 WSC71 Improved AGG|AGG
257 WSC72 Landrace AGG|AGG
258 WSC79 Landrace AGG|AGG
259 WSC94 Landrace AGG|AGG
260 WSC99 Landrace AGG|AGG
261 WSC100 Landrace AGG|AGG
262 WSC104 Landrace AGG|AGG
263 WSC105 Landrace AGG|AGG
264 WSC12 Landrace AGG|AGG
265 WSC13 Landrace AGG|AGG
266 WSC16 Landrace AGG|AGG
267 WSC17 Landrace AGG|AGG
268 WSC18 Landrace AGG|AGG
269 WSC20 Landrace AGG|AGG
270 WSC24 Landrace AGG|AGG
271 WSC25 Landrace AGG|AGG
272 WSC29 Landrace AGG|AGG
273 WSC31 Landrace AGG|AGG
274 WSC32 Landrace AGG|AGG
275 WSC34 Landrace AGG|AGG
276 WSC38 Landrace AGG|AGG
277 WSC39 Improved AGG|AGG
278 WSC40 Landrace AGG|AGG
279 WSC54 Landrace AGG|AGG
280 WSC56 Landrace AGG|AGG
281 WSC59 Landrace AGG|AGG
282 WSC68 Landrace AGG|AGG
283 WSC70 Landrace AGG|AGG
284 WSC73 Landrace AGG|AGG
285 WSC81 Landrace AGG|AGG
286 WSC85 Improved AGG|AGG
287 WSC91 Landrace AGG|AGG
288 WSC93 Landrace AGG|AGG
289 WSC98 Landrace AGG|AGG

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825544 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825544 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825544 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825544 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825544 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825544 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

Genome Browser