sorgsd

Variation ID : sbi33825546

Variation Detail

Variation ID	sbi33825546
Type	INDEL
Position	Chr01 30340-30343
Ref /Alleles	TGAG/ T
MAF	T: 0.007
5' Flank	AGGTGGTGGATCAGGATAATGTTGTGGATA
3' Flank	GAGTGGTAGCCATGAGAATGGAGAGATAAT

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	TGAG\|TGAG
2	103	Improved	TGAG\|TGAG
3	107	Improved	TGAG\|TGAG
4	11	Improved	TGAG\|TGAG
5	110	Improved	N\|N
6	123	Landrace	TGAG\|TGAG
7	131	Improved	TGAG\|TGAG
8	132	Improved	TGAG\|TGAG
9	135	Improved	TGAG\|TGAG
10	137	Improved	TGAG\|TGAG
11	138	Improved	TGAG\|TGAG
12	14	Improved	TGAG\|TGAG
13	140	Improved	TGAG\|TGAG
14	141	Improved	N\|N
15	144	Improved	TGAG\|TGAG
16	150	Improved	TGAG\|TGAG
17	154	Improved	TGAG\|TGAG
18	159	Landrace	TGAG\|TGAG
19	16	Improved	TGAG\|TGAG
20	161	Landrace	TGAG\|TGAG
21	167	Improved	TGAG\|TGAG
22	168	Improved	TGAG\|TGAG
23	170	Improved	TGAG\|TGAG
24	173	Improved	TGAG\|TGAG
25	175	Improved	TGAG\|TGAG
26	176	Improved	TGAG\|TGAG
27	182	Landrace	TGAG\|TGAG
28	186	Improved	TGAG\|TGAG
29	190	Improved	TGAG\|TGAG
30	192	Improved	TGAG\|TGAG
31	194	Improved	TGAG\|TGAG
32	195	Improved	TGAG\|TGAG
33	197	Improved	TGAG\|TGAG
34	J22	Landrace	TGAG\|TGAG
35	J26	Landrace	TGAG\|TGAG
36	J5	Landrace	TGAG\|TGAG
37	J50	Landrace	TGAG\|TGAG
38	2001	Landrace	TGAG\|TGAG
39	2005	Improved	TGAG\|TGAG
40	2008	Improved	TGAG\|TGAG
41	2009	Landrace	TGAG\|TGAG
42	201	Improved	TGAG\|TGAG
43	2010	Landrace	TGAG\|TGAG
44	2016	Improved	TGAG\|TGAG
45	2019	Improved	TGAG\|TGAG
46	202	Improved	TGAG\|TGAG
47	2021	Improved	TGAG\|TGAG
48	2023	Improved	TGAG\|TGAG
49	2026	Improved	TGAG\|TGAG
50	2029	Improved	TGAG\|TGAG
51	2030	Landrace	TGAG\|TGAG
52	2031	Landrace	TGAG\|TGAG
53	2036	Improved	TGAG\|TGAG
54	2037	Improved	TGAG\|TGAG
55	2038	Improved	TGAG\|TGAG
56	2039	Improved	TGAG\|TGAG
57	204	Improved	TGAG\|TGAG
58	2042	Improved	TGAG\|TGAG
59	2043	Improved	TGAG\|TGAG
60	2048	Improved	TGAG\|TGAG
61	2049	Improved	TGAG\|TGAG
62	205	Improved	TGAG\|TGAG
63	2050	Improved	TGAG\|TGAG
64	2052	Improved	TGAG\|TGAG
65	2054	Improved	TGAG\|TGAG
66	2056	Improved	TGAG\|TGAG
67	2059	Improved	TGAG\|TGAG
68	206	Improved	TGAG\|TGAG
69	2064	Improved	TGAG\|TGAG
70	2065	Improved	TGAG\|TGAG
71	2067	Improved	TGAG\|TGAG
72	2068	Improved	TGAG\|TGAG
73	2069	Improved	TGAG\|TGAG
74	2071	Improved	TGAG\|TGAG
75	2074	Improved	TGAG\|TGAG
76	2075	Improved	TGAG\|TGAG
77	2076	Improved	TGAG\|TGAG
78	2080	Improved	TGAG\|TGAG
79	2081	Improved	TGAG\|TGAG
80	2082	Improved	TGAG\|TGAG
81	2086	Improved	TGAG\|TGAG
82	2088	Improved	TGAG\|TGAG
83	260	Wild sorghum	TGAG\|TGAG
84	261	Improved	TGAG\|TGAG
85	262	Improved	TGAG\|TGAG
86	263	Improved	TGAG\|TGAG
87	286	Improved	TGAG\|TGAG
88	29	Improved	TGAG\|TGAG
89	3	Improved	TGAG\|TGAG
90	302546	S.propinquum	TGAG\|TGAG
91	31	Improved	TGAG\|TGAG
92	32	Improved	TGAG\|TGAG
93	34	Improved	TGAG\|TGAG
94	346	Landrace	TGAG\|TGAG
95	348	Wild sorghum	TGAG\|TGAG
96	353	Wild sorghum	TGAG\|TGAG
97	355	Wild sorghum	TGAG\|TGAG
98	357	Wild sorghum	TGAG\|TGAG
99	364	Wild sorghum	TGAG\|TGAG
100	367	Landrace	TGAG\|TGAG
101	s37	S.propinquum	TGAG\|TGAG
102	s38	S.propinquum	TGAG\|TGAG
103	370	Landrace	TGAG\|TGAG
104	377	Wild sorghum	TGAG\|TGAG
105	392	Wild sorghum	TGAG\|TGAG
106	394	Wild sorghum	TGAG\|TGAG
107	40	Improved	TGAG\|TGAG
108	42	Improved	TGAG\|TGAG
109	43	Improved	TGAG\|TGAG
110	45	Improved	TGAG\|TGAG
111	47	Improved	TGAG\|TGAG
112	48	Improved	TGAG\|TGAG
113	51	Improved	TGAG\|TGAG
114	53	Improved	TGAG\|TGAG
115	56	Improved	TGAG\|TGAG
116	61	Improved	TGAG\|TGAG
117	62	Improved	TGAG\|TGAG
118	66	Landrace	TGAG\|TGAG
119	67	Improved	TGAG\|TGAG
120	68	Improved	TGAG\|TGAG
121	70	Improved	TGAG\|TGAG
122	73	Improved	N\|N
123	75	Improved	TGAG\|TGAG
124	88	Improved	TGAG\|TGAG
125	89	Improved	TGAG\|TGAG
126	91	Improved	N\|N
127	92	Improved	TGAG\|TGAG
128	93	Improved	TGAG\|TGAG
129	94	Improved	TGAG\|TGAG
130	95	Improved	TGAG\|TGAG
131	96	Improved	TGAG\|TGAG
132	97	Improved	TGAG\|TGAG
133	s1	Improved	TGAG\|TGAG
134	s36	Wild sorghum	TGAG\|TGAG
135	s2	Landrace	TGAG\|TGAG
136	s3	Improved	TGAG\|TGAG
137	s32	Improved	TGAG\|TGAG
138	s43	Weedy	TGAG\|TGAG
139	s40	Landrace	TGAG\|TGAG
140	s41	Weedy	TGAG\|TGAG
141	s39	Landrace	TGAG\|TGAG
142	s42	Landrace	TGAG\|TGAG
143	s47	Improved	TGAG\|TGAG
144	s5	Landrace	TGAG\|TGAG
145	GW102	Landrace	TGAG\|TGAG
146	GW103	Landrace	TGAG\|TGAG
147	GW104	Landrace	TGAG\|TGAG
148	GW105	Landrace	TGAG\|TGAG
149	GW16	Landrace	TGAG\|TGAG
150	GW2	Landrace	TGAG\|TGAG
151	GW34	Landrace	TGAG\|TGAG
152	GW37	Landrace	TGAG\|TGAG
153	GW58	Landrace	TGAG\|TGAG
154	GW59	Landrace	TGAG\|TGAG
155	GW9	Landrace	TGAG\|TGAG
156	s4	Weedy	TGAG\|TGAG
157	s6	Improved	TGAG\|TGAG
158	s7	Landrace	TGAG\|TGAG
159	s8	Landrace	TGAG\|TGAG
160	s9	Landrace	TGAG\|TGAG
161	J101	Landrace	TGAG\|TGAG
162	J103	Improved	TGAG\|TGAG
163	J112	Landrace	TGAG\|TGAG
164	J113	Improved	TGAG\|TGAG
165	J129	Improved	TGAG\|TGAG
166	J130	Improved	TGAG\|TGAG
167	J136	Improved	TGAG\|TGAG
168	J152	Improved	TGAG\|TGAG
169	J2	Landrace	TGAG\|TGAG
170	J20	Landrace	TGAG\|TGAG
171	J4	Landrace	N\|N
172	J42	Landrace	TGAG\|TGAG
173	J44	Landrace	TGAG\|TGAG
174	J49	Landrace	TGAG\|TGAG
175	J52	Landrace	TGAG\|TGAG
176	J53	Landrace	TGAG\|TGAG
177	J54	Landrace	TGAG\|TGAG
178	J57	Landrace	TGAG\|TGAG
179	J59	Landrace	TGAG\|TGAG
180	J64	Landrace	TGAG\|TGAG
181	J66	Landrace	TGAG\|TGAG
182	J67	Landrace	TGAG\|TGAG
183	J69	Landrace	TGAG\|TGAG
184	J87	Landrace	TGAG\|TGAG
185	J99	Landrace	TGAG\|TGAG
186	s45	Landrace	TGAG\|TGAG
187	s11	Improved	TGAG\|TGAG
188	s10	Improved	TGAG\|TGAG
189	s46	Improved	TGAG\|TGAG
190	s12	Improved	TGAG\|TGAG
191	s13	Landrace	TGAG\|TGAG
192	MHMD	Landrace	TGAG\|TGAG
193	s14	Improved	TGAG\|TGAG
194	s15	Improved	TGAG\|TGAG
195	s34	Weedy	TGAG\|TGAG
196	s33	Wild sorghum	TGAG\|TGAG
197	s21	Wild sorghum	TGAG\|TGAG
198	s16	Wild sorghum	TGAG\|TGAG
199	s44	Improved	TGAG\|TGAG
200	s35	Landrace	TGAG\|TGAG
201	s31	Wild sorghum	TGAG\|TGAG
202	s17	Improved	TGAG\|TGAG
203	s18	Improved	TGAG\|TGAG
204	s20	Improved	TGAG\|TGAG
205	s19	Improved	TGAG\|TGAG
206	s22	Landrace	TGAG\|TGAG
207	s23	Landrace	TGAG\|TGAG
208	s24	Landrace	TGAG\|TGAG
209	s25	Landrace	TGAG\|TGAG
210	s26	Landrace	TGAG\|TGAG
211	s27	Landrace	TGAG\|TGAG
212	s28	Landrace	TGAG\|TGAG
213	s29	Landrace	TGAG\|TGAG
214	s30	Landrace	TGAG\|TGAG
215	SL25	Wild sorghum	TGAG\|TGAG
216	SL105	Wild sorghum	TGAG\|TGAG
217	SL108	Wild sorghum	TGAG\|TGAG
218	SL109	Wild sorghum	TGAG\|TGAG
219	SL12	Wild sorghum	TGAG\|TGAG
220	SL129	Wild sorghum	TGAG\|TGAG
221	SL130	Wild sorghum	T\|T
222	SL135	Wild sorghum	TGAG\|TGAG
223	SL136	Wild sorghum	TGAG\|TGAG
224	SL137	Wild sorghum	TGAG\|TGAG
225	SL138	Wild sorghum	TGAG\|TGAG
226	SL140	Wild sorghum	TGAG\|TGAG
227	SL141	Wild sorghum	TGAG\|TGAG
228	SL19	Wild sorghum	N\|N
229	SL28	Wild sorghum	TGAG\|TGAG
230	SL32	Wild sorghum	T\|T
231	SL35	Wild sorghum	TGAG\|TGAG
232	SL36	Wild sorghum	TGAG\|TGAG
233	SL37	Wild sorghum	TGAG\|TGAG
234	SL39	Wild sorghum	TGAG\|TGAG
235	SL41	Wild sorghum	TGAG\|TGAG
236	SL43	Wild sorghum	TGAG\|TGAG
237	SL47	Wild sorghum	TGAG\|TGAG
238	SL49	Wild sorghum	TGAG\|TGAG
239	SL51	Wild sorghum	TGAG\|TGAG
240	SL53	Wild sorghum	TGAG\|TGAG
241	SL62	Wild sorghum	TGAG\|TGAG
242	SL83	Wild sorghum	TGAG\|TGAG
243	SL97	Landrace	TGAG\|TGAG
244	s48	Improved	TGAG\|TGAG
245	Tu13	Wild sorghum	TGAG\|TGAG
246	Tu14	Wild sorghum	TGAG\|TGAG
247	Tu30	Wild sorghum	TGAG\|TGAG
248	Tu5	Wild sorghum	TGAG\|TGAG
249	WSC5	Landrace	TGAG\|TGAG
250	WSC15	Landrace	TGAG\|TGAG
251	WSC19	Landrace	TGAG\|TGAG
252	WSC30	Landrace	TGAG\|TGAG
253	WSC52	Landrace	TGAG\|TGAG
254	WSC6	Landrace	TGAG\|TGAG
255	WSC61	Landrace	TGAG\|TGAG
256	WSC71	Improved	TGAG\|TGAG
257	WSC72	Landrace	TGAG\|TGAG
258	WSC79	Landrace	TGAG\|TGAG
259	WSC94	Landrace	TGAG\|TGAG
260	WSC99	Landrace	TGAG\|TGAG
261	WSC100	Landrace	TGAG\|TGAG
262	WSC104	Landrace	TGAG\|TGAG
263	WSC105	Landrace	TGAG\|TGAG
264	WSC12	Landrace	TGAG\|TGAG
265	WSC13	Landrace	TGAG\|TGAG
266	WSC16	Landrace	TGAG\|TGAG
267	WSC17	Landrace	TGAG\|TGAG
268	WSC18	Landrace	TGAG\|TGAG
269	WSC20	Landrace	TGAG\|TGAG
270	WSC24	Landrace	TGAG\|TGAG
271	WSC25	Landrace	TGAG\|TGAG
272	WSC29	Landrace	TGAG\|TGAG
273	WSC31	Landrace	TGAG\|TGAG
274	WSC32	Landrace	TGAG\|TGAG
275	WSC34	Landrace	TGAG\|TGAG
276	WSC38	Landrace	TGAG\|TGAG
277	WSC39	Improved	TGAG\|TGAG
278	WSC40	Landrace	TGAG\|TGAG
279	WSC54	Landrace	TGAG\|TGAG
280	WSC56	Landrace	TGAG\|TGAG
281	WSC59	Landrace	TGAG\|TGAG
282	WSC68	Landrace	TGAG\|TGAG
283	WSC70	Landrace	TGAG\|TGAG
284	WSC73	Landrace	TGAG\|TGAG
285	WSC81	Landrace	TGAG\|TGAG
286	WSC85	Improved	TGAG\|TGAG
287	WSC91	Landrace	TGAG\|TGAG
288	WSC93	Landrace	TGAG\|TGAG
289	WSC98	Landrace	TGAG\|TGAG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825546	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825546	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825546	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825546	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825546	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825546	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

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