sorgsd

Variation ID : sbi33825561

Variation Detail

Variation ID	sbi33825561
Type	INDEL
Position	Chr01 36396-36397
Ref /Alleles	GT/ G
MAF	G: 0.043
5' Flank	GAGAGAGAGGTTTCAATAAACTCTAAGAAC
3' Flank	TTTTTTTTCCCAGCCTATCAGTAACATCAG

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	GT\|GT
2	103	Improved	GT\|GT
3	107	Improved	GT\|GT
4	11	Improved	G\|G
5	110	Improved	GT\|GT
6	123	Landrace	GT\|GT
7	131	Improved	GT\|GT
8	132	Improved	GT\|GT
9	135	Improved	G\|G
10	137	Improved	GT\|GT
11	138	Improved	GT\|GT
12	14	Improved	GT\|GT
13	140	Improved	GT\|GT
14	141	Improved	GT\|GT
15	144	Improved	GT\|GT
16	150	Improved	GT\|GT
17	154	Improved	GT\|GT
18	159	Landrace	GT\|GT
19	16	Improved	GT\|GT
20	161	Landrace	GT\|GT
21	167	Improved	GT\|GT
22	168	Improved	GT\|GT
23	170	Improved	GT\|GT
24	173	Improved	GT\|GT
25	175	Improved	GT\|GT
26	176	Improved	GT\|GT
27	182	Landrace	GT\|GT
28	186	Improved	GT\|GT
29	190	Improved	GT\|GT
30	192	Improved	GT\|GT
31	194	Improved	GT\|GT
32	195	Improved	GT\|GT
33	197	Improved	GT\|GT
34	J22	Landrace	GT\|GT
35	J26	Landrace	GT\|GT
36	J5	Landrace	GT\|GT
37	J50	Landrace	GT\|GT
38	2001	Landrace	GT\|GT
39	2005	Improved	GT\|GT
40	2008	Improved	GT\|GT
41	2009	Landrace	N\|N
42	201	Improved	GT\|GT
43	2010	Landrace	GT\|GT
44	2016	Improved	GT\|GT
45	2019	Improved	GT\|GT
46	202	Improved	N\|N
47	2021	Improved	GT\|GT
48	2023	Improved	GT\|GT
49	2026	Improved	GT\|GT
50	2029	Improved	GT\|GT
51	2030	Landrace	GT\|GT
52	2031	Landrace	GT\|GT
53	2036	Improved	GT\|GT
54	2037	Improved	GT\|GT
55	2038	Improved	GT\|GT
56	2039	Improved	GT\|GT
57	204	Improved	GT\|GT
58	2042	Improved	GT\|GT
59	2043	Improved	GT\|GT
60	2048	Improved	GT\|GT
61	2049	Improved	GT\|GT
62	205	Improved	GT\|GT
63	2050	Improved	N\|N
64	2052	Improved	GT\|GT
65	2054	Improved	GT\|GT
66	2056	Improved	GT\|GT
67	2059	Improved	GT\|GT
68	206	Improved	GT\|GT
69	2064	Improved	GT\|GT
70	2065	Improved	GT\|GT
71	2067	Improved	N\|N
72	2068	Improved	GT\|GT
73	2069	Improved	GT\|GT
74	2071	Improved	GT\|GT
75	2074	Improved	GT\|GT
76	2075	Improved	GT\|GT
77	2076	Improved	GT\|GT
78	2080	Improved	GT\|GT
79	2081	Improved	GT\|GT
80	2082	Improved	GT\|GT
81	2086	Improved	GT\|GT
82	2088	Improved	GT\|GT
83	260	Wild sorghum	GT\|GT
84	261	Improved	GT\|GT
85	262	Improved	GT\|GT
86	263	Improved	GT\|GT
87	286	Improved	GT\|GT
88	29	Improved	GT\|GT
89	3	Improved	GT\|GT
90	302546	S.propinquum	GT\|GT
91	31	Improved	GT\|GT
92	32	Improved	GT\|GT
93	34	Improved	GT\|GT
94	346	Landrace	GT\|GT
95	348	Wild sorghum	GT\|GT
96	353	Wild sorghum	GT\|GT
97	355	Wild sorghum	GT\|GT
98	357	Wild sorghum	GT\|GT
99	364	Wild sorghum	GT\|GT
100	367	Landrace	GT\|GT
101	s37	S.propinquum	GT\|GT
102	s38	S.propinquum	GT\|GT
103	370	Landrace	GT\|GT
104	377	Wild sorghum	GT\|GT
105	392	Wild sorghum	GT\|GT
106	394	Wild sorghum	GT\|GT
107	40	Improved	GT\|GT
108	42	Improved	GT\|GT
109	43	Improved	GT\|GT
110	45	Improved	GT\|GT
111	47	Improved	GT\|GT
112	48	Improved	GT\|GT
113	51	Improved	GT\|GT
114	53	Improved	GT\|GT
115	56	Improved	GT\|GT
116	61	Improved	GT\|GT
117	62	Improved	GT\|GT
118	66	Landrace	GT\|GT
119	67	Improved	GT\|GT
120	68	Improved	GT\|GT
121	70	Improved	GT\|GT
122	73	Improved	N\|N
123	75	Improved	N\|N
124	88	Improved	GT\|GT
125	89	Improved	GT\|GT
126	91	Improved	GT\|GT
127	92	Improved	GT\|GT
128	93	Improved	GT\|GT
129	94	Improved	GT\|GT
130	95	Improved	GT\|GT
131	96	Improved	N\|N
132	97	Improved	GT\|GT
133	s1	Improved	GT\|GT
134	s36	Wild sorghum	GT\|GT
135	s2	Landrace	GT\|GT
136	s3	Improved	GT\|GT
137	s32	Improved	GT\|GT
138	s43	Weedy	GT\|GT
139	s40	Landrace	GT\|GT
140	s41	Weedy	GT\|GT
141	s39	Landrace	GT\|GT
142	s42	Landrace	GT\|GT
143	s47	Improved	GT\|GT
144	s5	Landrace	GT\|GT
145	GW102	Landrace	GT\|GT
146	GW103	Landrace	GT\|GT
147	GW104	Landrace	GT\|GT
148	GW105	Landrace	N\|N
149	GW16	Landrace	GT\|GT
150	GW2	Landrace	GT\|GT
151	GW34	Landrace	GT\|GT
152	GW37	Landrace	GT\|GT
153	GW58	Landrace	G\|G
154	GW59	Landrace	GT\|GT
155	GW9	Landrace	GT\|GT
156	s4	Weedy	GT\|GT
157	s6	Improved	GT\|GT
158	s7	Landrace	GT\|GT
159	s8	Landrace	GT\|GT
160	s9	Landrace	GT\|GT
161	J101	Landrace	GT\|GT
162	J103	Improved	GT\|GT
163	J112	Landrace	GT\|GT
164	J113	Improved	GT\|GT
165	J129	Improved	GT\|GT
166	J130	Improved	GT\|GT
167	J136	Improved	GT\|GT
168	J152	Improved	GT\|GT
169	J2	Landrace	GT\|GT
170	J20	Landrace	GT\|GT
171	J4	Landrace	GT\|GT
172	J42	Landrace	GT\|GT
173	J44	Landrace	GT\|GT
174	J49	Landrace	GT\|GT
175	J52	Landrace	GT\|GT
176	J53	Landrace	GT\|GT
177	J54	Landrace	GT\|GT
178	J57	Landrace	GT\|GT
179	J59	Landrace	GT\|GT
180	J64	Landrace	GT\|GT
181	J66	Landrace	GT\|GT
182	J67	Landrace	GT\|GT
183	J69	Landrace	GT\|GT
184	J87	Landrace	GT\|GT
185	J99	Landrace	GT\|GT
186	s45	Landrace	GT\|GT
187	s11	Improved	GT\|GT
188	s10	Improved	GT\|GT
189	s46	Improved	GT\|GT
190	s12	Improved	GT\|GT
191	s13	Landrace	GT\|GT
192	MHMD	Landrace	GT\|GT
193	s14	Improved	GT\|GT
194	s15	Improved	GT\|GT
195	s34	Weedy	GT\|GT
196	s33	Wild sorghum	GT\|GT
197	s21	Wild sorghum	GT\|GT
198	s16	Wild sorghum	GT\|GT
199	s44	Improved	GT\|GT
200	s35	Landrace	GT\|GT
201	s31	Wild sorghum	GT\|GT
202	s17	Improved	GT\|GT
203	s18	Improved	GT\|GT
204	s20	Improved	GT\|GT
205	s19	Improved	GT\|GT
206	s22	Landrace	GT\|GT
207	s23	Landrace	GT\|GT
208	s24	Landrace	GT\|GT
209	s25	Landrace	GT\|GT
210	s26	Landrace	GT\|GT
211	s27	Landrace	GT\|GT
212	s28	Landrace	GT\|GT
213	s29	Landrace	GT\|GT
214	s30	Landrace	GT\|GT
215	SL25	Wild sorghum	GT\|GT
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	G\|G
218	SL109	Wild sorghum	GT\|GT
219	SL12	Wild sorghum	G\|G
220	SL129	Wild sorghum	G\|G
221	SL130	Wild sorghum	GT\|GT
222	SL135	Wild sorghum	GT\|GT
223	SL136	Wild sorghum	GT\|GT
224	SL137	Wild sorghum	GT\|GT
225	SL138	Wild sorghum	GT\|GT
226	SL140	Wild sorghum	G\|G
227	SL141	Wild sorghum	G\|G
228	SL19	Wild sorghum	GT\|GT
229	SL28	Wild sorghum	GT\|GT
230	SL32	Wild sorghum	GT\|GT
231	SL35	Wild sorghum	GT\|GT
232	SL36	Wild sorghum	GT\|GT
233	SL37	Wild sorghum	N\|N
234	SL39	Wild sorghum	GT\|GT
235	SL41	Wild sorghum	GT\|GT
236	SL43	Wild sorghum	GT\|GT
237	SL47	Wild sorghum	GT\|GT
238	SL49	Wild sorghum	GT\|GT
239	SL51	Wild sorghum	G\|G
240	SL53	Wild sorghum	GT\|GT
241	SL62	Wild sorghum	GT\|GT
242	SL83	Wild sorghum	GT\|GT
243	SL97	Landrace	N\|N
244	s48	Improved	GT\|GT
245	Tu13	Wild sorghum	GT\|GT
246	Tu14	Wild sorghum	GT\|GT
247	Tu30	Wild sorghum	N\|N
248	Tu5	Wild sorghum	G\|G
249	WSC5	Landrace	N\|N
250	WSC15	Landrace	GT\|GT
251	WSC19	Landrace	GT\|GT
252	WSC30	Landrace	GT\|GT
253	WSC52	Landrace	GT\|GT
254	WSC6	Landrace	GT\|GT
255	WSC61	Landrace	GT\|GT
256	WSC71	Improved	GT\|GT
257	WSC72	Landrace	GT\|GT
258	WSC79	Landrace	GT\|GT
259	WSC94	Landrace	GT\|GT
260	WSC99	Landrace	GT\|GT
261	WSC100	Landrace	GT\|GT
262	WSC104	Landrace	GT\|GT
263	WSC105	Landrace	GT\|GT
264	WSC12	Landrace	GT\|GT
265	WSC13	Landrace	GT\|GT
266	WSC16	Landrace	GT\|GT
267	WSC17	Landrace	GT\|GT
268	WSC18	Landrace	GT\|GT
269	WSC20	Landrace	GT\|GT
270	WSC24	Landrace	GT\|GT
271	WSC25	Landrace	GT\|GT
272	WSC29	Landrace	GT\|GT
273	WSC31	Landrace	GT\|GT
274	WSC32	Landrace	G\|G
275	WSC34	Landrace	GT\|GT
276	WSC38	Landrace	GT\|GT
277	WSC39	Improved	GT\|GT
278	WSC40	Landrace	GT\|GT
279	WSC54	Landrace	GT\|GT
280	WSC56	Landrace	GT\|GT
281	WSC59	Landrace	G\|G
282	WSC68	Landrace	GT\|GT
283	WSC70	Landrace	GT\|GT
284	WSC73	Landrace	GT\|GT
285	WSC81	Landrace	GT\|GT
286	WSC85	Improved	GT\|GT
287	WSC91	Landrace	GT\|GT
288	WSC93	Landrace	GT\|GT
289	WSC98	Landrace	GT\|GT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825561	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825561	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825561	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825561	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825561	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825561	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

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