sorgsd

Variation ID : sbi33825568

Variation Detail

Variation ID	sbi33825568
Type	INDEL
Position	Chr01 38344-38347
Ref /Alleles	CAAT/ C
MAF	C: 0.008
5' Flank	GTATGGTACGGGGGTCTTTTCAGAATTGGG
3' Flank	AAGGTCCTGTTTAGTGAAGGCTCGAGAATA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	N\|N
2	103	Improved	CAAT\|CAAT
3	107	Improved	CAAT\|CAAT
4	11	Improved	CAAT\|CAAT
5	110	Improved	CAAT\|CAAT
6	123	Landrace	CAAT\|CAAT
7	131	Improved	CAAT\|CAAT
8	132	Improved	CAAT\|CAAT
9	135	Improved	CAAT\|CAAT
10	137	Improved	CAAT\|CAAT
11	138	Improved	CAAT\|CAAT
12	14	Improved	CAAT\|CAAT
13	140	Improved	CAAT\|CAAT
14	141	Improved	CAAT\|CAAT
15	144	Improved	CAAT\|CAAT
16	150	Improved	CAAT\|CAAT
17	154	Improved	CAAT\|CAAT
18	159	Landrace	CAAT\|CAAT
19	16	Improved	CAAT\|CAAT
20	161	Landrace	CAAT\|CAAT
21	167	Improved	N\|N
22	168	Improved	CAAT\|CAAT
23	170	Improved	CAAT\|CAAT
24	173	Improved	CAAT\|CAAT
25	175	Improved	CAAT\|CAAT
26	176	Improved	CAAT\|CAAT
27	182	Landrace	N\|N
28	186	Improved	CAAT\|CAAT
29	190	Improved	N\|N
30	192	Improved	N\|N
31	194	Improved	CAAT\|CAAT
32	195	Improved	CAAT\|CAAT
33	197	Improved	N\|N
34	J22	Landrace	CAAT\|CAAT
35	J26	Landrace	CAAT\|CAAT
36	J5	Landrace	CAAT\|CAAT
37	J50	Landrace	CAAT\|CAAT
38	2001	Landrace	CAAT\|CAAT
39	2005	Improved	CAAT\|CAAT
40	2008	Improved	N\|N
41	2009	Landrace	N\|N
42	201	Improved	CAAT\|CAAT
43	2010	Landrace	CAAT\|CAAT
44	2016	Improved	CAAT\|CAAT
45	2019	Improved	CAAT\|CAAT
46	202	Improved	CAAT\|CAAT
47	2021	Improved	CAAT\|CAAT
48	2023	Improved	N\|N
49	2026	Improved	N\|N
50	2029	Improved	CAAT\|CAAT
51	2030	Landrace	CAAT\|CAAT
52	2031	Landrace	CAAT\|CAAT
53	2036	Improved	CAAT\|CAAT
54	2037	Improved	CAAT\|CAAT
55	2038	Improved	CAAT\|CAAT
56	2039	Improved	CAAT\|CAAT
57	204	Improved	CAAT\|CAAT
58	2042	Improved	CAAT\|CAAT
59	2043	Improved	CAAT\|CAAT
60	2048	Improved	CAAT\|CAAT
61	2049	Improved	CAAT\|CAAT
62	205	Improved	N\|N
63	2050	Improved	N\|N
64	2052	Improved	CAAT\|CAAT
65	2054	Improved	CAAT\|CAAT
66	2056	Improved	CAAT\|CAAT
67	2059	Improved	CAAT\|CAAT
68	206	Improved	CAAT\|CAAT
69	2064	Improved	CAAT\|CAAT
70	2065	Improved	CAAT\|CAAT
71	2067	Improved	CAAT\|CAAT
72	2068	Improved	CAAT\|CAAT
73	2069	Improved	CAAT\|CAAT
74	2071	Improved	CAAT\|CAAT
75	2074	Improved	CAAT\|CAAT
76	2075	Improved	CAAT\|CAAT
77	2076	Improved	CAAT\|CAAT
78	2080	Improved	N\|N
79	2081	Improved	CAAT\|CAAT
80	2082	Improved	CAAT\|CAAT
81	2086	Improved	CAAT\|CAAT
82	2088	Improved	CAAT\|CAAT
83	260	Wild sorghum	CAAT\|CAAT
84	261	Improved	CAAT\|CAAT
85	262	Improved	CAAT\|CAAT
86	263	Improved	CAAT\|CAAT
87	286	Improved	CAAT\|CAAT
88	29	Improved	CAAT\|CAAT
89	3	Improved	CAAT\|CAAT
90	302546	S.propinquum	N\|N
91	31	Improved	CAAT\|CAAT
92	32	Improved	CAAT\|CAAT
93	34	Improved	CAAT\|CAAT
94	346	Landrace	N\|N
95	348	Wild sorghum	CAAT\|CAAT
96	353	Wild sorghum	CAAT\|CAAT
97	355	Wild sorghum	CAAT\|CAAT
98	357	Wild sorghum	CAAT\|CAAT
99	364	Wild sorghum	CAAT\|CAAT
100	367	Landrace	CAAT\|CAAT
101	s37	S.propinquum	C\|C
102	s38	S.propinquum	C\|C
103	370	Landrace	CAAT\|CAAT
104	377	Wild sorghum	CAAT\|CAAT
105	392	Wild sorghum	CAAT\|CAAT
106	394	Wild sorghum	CAAT\|CAAT
107	40	Improved	N\|N
108	42	Improved	CAAT\|CAAT
109	43	Improved	CAAT\|CAAT
110	45	Improved	CAAT\|CAAT
111	47	Improved	N\|N
112	48	Improved	CAAT\|CAAT
113	51	Improved	N\|N
114	53	Improved	CAAT\|CAAT
115	56	Improved	CAAT\|CAAT
116	61	Improved	CAAT\|CAAT
117	62	Improved	CAAT\|CAAT
118	66	Landrace	CAAT\|CAAT
119	67	Improved	CAAT\|CAAT
120	68	Improved	CAAT\|CAAT
121	70	Improved	CAAT\|CAAT
122	73	Improved	N\|N
123	75	Improved	CAAT\|CAAT
124	88	Improved	CAAT\|CAAT
125	89	Improved	CAAT\|CAAT
126	91	Improved	CAAT\|CAAT
127	92	Improved	CAAT\|CAAT
128	93	Improved	CAAT\|CAAT
129	94	Improved	CAAT\|CAAT
130	95	Improved	CAAT\|CAAT
131	96	Improved	CAAT\|CAAT
132	97	Improved	CAAT\|CAAT
133	s1	Improved	CAAT\|CAAT
134	s36	Wild sorghum	CAAT\|CAAT
135	s2	Landrace	CAAT\|CAAT
136	s3	Improved	CAAT\|CAAT
137	s32	Improved	CAAT\|CAAT
138	s43	Weedy	CAAT\|CAAT
139	s40	Landrace	CAAT\|CAAT
140	s41	Weedy	CAAT\|CAAT
141	s39	Landrace	CAAT\|CAAT
142	s42	Landrace	CAAT\|CAAT
143	s47	Improved	CAAT\|CAAT
144	s5	Landrace	CAAT\|CAAT
145	GW102	Landrace	CAAT\|CAAT
146	GW103	Landrace	CAAT\|CAAT
147	GW104	Landrace	CAAT\|CAAT
148	GW105	Landrace	CAAT\|CAAT
149	GW16	Landrace	CAAT\|CAAT
150	GW2	Landrace	CAAT\|CAAT
151	GW34	Landrace	CAAT\|CAAT
152	GW37	Landrace	CAAT\|CAAT
153	GW58	Landrace	CAAT\|CAAT
154	GW59	Landrace	CAAT\|CAAT
155	GW9	Landrace	N\|N
156	s4	Weedy	CAAT\|CAAT
157	s6	Improved	CAAT\|CAAT
158	s7	Landrace	CAAT\|CAAT
159	s8	Landrace	CAAT\|CAAT
160	s9	Landrace	CAAT\|CAAT
161	J101	Landrace	CAAT\|CAAT
162	J103	Improved	N\|N
163	J112	Landrace	CAAT\|CAAT
164	J113	Improved	CAAT\|CAAT
165	J129	Improved	CAAT\|CAAT
166	J130	Improved	N\|N
167	J136	Improved	N\|N
168	J152	Improved	CAAT\|CAAT
169	J2	Landrace	N\|N
170	J20	Landrace	CAAT\|CAAT
171	J4	Landrace	CAAT\|CAAT
172	J42	Landrace	CAAT\|CAAT
173	J44	Landrace	CAAT\|CAAT
174	J49	Landrace	CAAT\|CAAT
175	J52	Landrace	CAAT\|CAAT
176	J53	Landrace	N\|N
177	J54	Landrace	CAAT\|CAAT
178	J57	Landrace	CAAT\|CAAT
179	J59	Landrace	CAAT\|CAAT
180	J64	Landrace	CAAT\|CAAT
181	J66	Landrace	CAAT\|CAAT
182	J67	Landrace	N\|N
183	J69	Landrace	CAAT\|CAAT
184	J87	Landrace	CAAT\|CAAT
185	J99	Landrace	N\|N
186	s45	Landrace	CAAT\|CAAT
187	s11	Improved	CAAT\|CAAT
188	s10	Improved	CAAT\|CAAT
189	s46	Improved	CAAT\|CAAT
190	s12	Improved	CAAT\|CAAT
191	s13	Landrace	CAAT\|CAAT
192	MHMD	Landrace	CAAT\|CAAT
193	s14	Improved	CAAT\|CAAT
194	s15	Improved	CAAT\|CAAT
195	s34	Weedy	CAAT\|CAAT
196	s33	Wild sorghum	CAAT\|CAAT
197	s21	Wild sorghum	CAAT\|CAAT
198	s16	Wild sorghum	CAAT\|CAAT
199	s44	Improved	CAAT\|CAAT
200	s35	Landrace	CAAT\|CAAT
201	s31	Wild sorghum	CAAT\|CAAT
202	s17	Improved	CAAT\|CAAT
203	s18	Improved	CAAT\|CAAT
204	s20	Improved	CAAT\|CAAT
205	s19	Improved	CAAT\|CAAT
206	s22	Landrace	CAAT\|CAAT
207	s23	Landrace	CAAT\|CAAT
208	s24	Landrace	CAAT\|CAAT
209	s25	Landrace	CAAT\|CAAT
210	s26	Landrace	CAAT\|CAAT
211	s27	Landrace	CAAT\|CAAT
212	s28	Landrace	CAAT\|CAAT
213	s29	Landrace	CAAT\|CAAT
214	s30	Landrace	CAAT\|CAAT
215	SL25	Wild sorghum	CAAT\|CAAT
216	SL105	Wild sorghum	N\|N
217	SL108	Wild sorghum	CAAT\|CAAT
218	SL109	Wild sorghum	CAAT\|CAAT
219	SL12	Wild sorghum	CAAT\|CAAT
220	SL129	Wild sorghum	CAAT\|CAAT
221	SL130	Wild sorghum	CAAT\|CAAT
222	SL135	Wild sorghum	CAAT\|CAAT
223	SL136	Wild sorghum	CAAT\|CAAT
224	SL137	Wild sorghum	CAAT\|CAAT
225	SL138	Wild sorghum	CAAT\|CAAT
226	SL140	Wild sorghum	CAAT\|CAAT
227	SL141	Wild sorghum	CAAT\|CAAT
228	SL19	Wild sorghum	N\|N
229	SL28	Wild sorghum	CAAT\|CAAT
230	SL32	Wild sorghum	CAAT\|CAAT
231	SL35	Wild sorghum	CAAT\|CAAT
232	SL36	Wild sorghum	CAAT\|CAAT
233	SL37	Wild sorghum	N\|N
234	SL39	Wild sorghum	N\|N
235	SL41	Wild sorghum	CAAT\|CAAT
236	SL43	Wild sorghum	CAAT\|CAAT
237	SL47	Wild sorghum	CAAT\|CAAT
238	SL49	Wild sorghum	CAAT\|CAAT
239	SL51	Wild sorghum	CAAT\|CAAT
240	SL53	Wild sorghum	CAAT\|CAAT
241	SL62	Wild sorghum	CAAT\|CAAT
242	SL83	Wild sorghum	CAAT\|CAAT
243	SL97	Landrace	CAAT\|CAAT
244	s48	Improved	CAAT\|CAAT
245	Tu13	Wild sorghum	CAAT\|CAAT
246	Tu14	Wild sorghum	CAAT\|CAAT
247	Tu30	Wild sorghum	CAAT\|CAAT
248	Tu5	Wild sorghum	CAAT\|CAAT
249	WSC5	Landrace	CAAT\|CAAT
250	WSC15	Landrace	CAAT\|CAAT
251	WSC19	Landrace	CAAT\|CAAT
252	WSC30	Landrace	CAAT\|CAAT
253	WSC52	Landrace	CAAT\|CAAT
254	WSC6	Landrace	CAAT\|CAAT
255	WSC61	Landrace	N\|N
256	WSC71	Improved	CAAT\|CAAT
257	WSC72	Landrace	CAAT\|CAAT
258	WSC79	Landrace	CAAT\|CAAT
259	WSC94	Landrace	CAAT\|CAAT
260	WSC99	Landrace	CAAT\|CAAT
261	WSC100	Landrace	CAAT\|CAAT
262	WSC104	Landrace	CAAT\|CAAT
263	WSC105	Landrace	CAAT\|CAAT
264	WSC12	Landrace	CAAT\|CAAT
265	WSC13	Landrace	CAAT\|CAAT
266	WSC16	Landrace	CAAT\|CAAT
267	WSC17	Landrace	CAAT\|CAAT
268	WSC18	Landrace	N\|N
269	WSC20	Landrace	N\|N
270	WSC24	Landrace	CAAT\|CAAT
271	WSC25	Landrace	N\|N
272	WSC29	Landrace	CAAT\|CAAT
273	WSC31	Landrace	CAAT\|CAAT
274	WSC32	Landrace	N\|N
275	WSC34	Landrace	CAAT\|CAAT
276	WSC38	Landrace	CAAT\|CAAT
277	WSC39	Improved	CAAT\|CAAT
278	WSC40	Landrace	CAAT\|CAAT
279	WSC54	Landrace	CAAT\|CAAT
280	WSC56	Landrace	CAAT\|CAAT
281	WSC59	Landrace	CAAT\|CAAT
282	WSC68	Landrace	CAAT\|CAAT
283	WSC70	Landrace	CAAT\|CAAT
284	WSC73	Landrace	CAAT\|CAAT
285	WSC81	Landrace	CAAT\|CAAT
286	WSC85	Improved	CAAT\|CAAT
287	WSC91	Landrace	CAAT\|CAAT
288	WSC93	Landrace	N\|N
289	WSC98	Landrace	CAAT\|CAAT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825568	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825568	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825568	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825568	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825568	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825568	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

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