Variation ID : sbi33825581

Variation Detail



Variation ID sbi33825581
Type INDEL
Position Chr01 39470-39475
Ref /Alleles ACACTT/ A
MAF A: 0.016
5' Flank CCCAAAGATTTTTCAAGTTCGGATTTGAGG
3' Flank GAAATTCAACTTGGCACATATATTGAAGAT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved ACACTT|ACACTT
2 103 Improved ACACTT|ACACTT
3 107 Improved ACACTT|ACACTT
4 11 Improved ACACTT|ACACTT
5 110 Improved ACACTT|ACACTT
6 123 Landrace ACACTT|ACACTT
7 131 Improved ACACTT|ACACTT
8 132 Improved ACACTT|ACACTT
9 135 Improved ACACTT|ACACTT
10 137 Improved ACACTT|ACACTT
11 138 Improved ACACTT|ACACTT
12 14 Improved ACACTT|ACACTT
13 140 Improved ACACTT|A
14 141 Improved ACACTT|ACACTT
15 144 Improved ACACTT|ACACTT
16 150 Improved ACACTT|A
17 154 Improved ACACTT|ACACTT
18 159 Landrace ACACTT|ACACTT
19 16 Improved ACACTT|ACACTT
20 161 Landrace ACACTT|ACACTT
21 167 Improved ACACTT|ACACTT
22 168 Improved ACACTT|ACACTT
23 170 Improved ACACTT|ACACTT
24 173 Improved ACACTT|ACACTT
25 175 Improved ACACTT|ACACTT
26 176 Improved ACACTT|ACACTT
27 182 Landrace ACACTT|ACACTT
28 186 Improved ACACTT|ACACTT
29 190 Improved ACACTT|ACACTT
30 192 Improved ACACTT|ACACTT
31 194 Improved ACACTT|ACACTT
32 195 Improved ACACTT|ACACTT
33 197 Improved ACACTT|ACACTT
34 J22 Landrace ACACTT|ACACTT
35 J26 Landrace ACACTT|ACACTT
36 J5 Landrace ACACTT|ACACTT
37 J50 Landrace ACACTT|ACACTT
38 2001 Landrace ACACTT|ACACTT
39 2005 Improved ACACTT|ACACTT
40 2008 Improved N|N
41 2009 Landrace ACACTT|ACACTT
42 201 Improved ACACTT|ACACTT
43 2010 Landrace ACACTT|A
44 2016 Improved ACACTT|ACACTT
45 2019 Improved ACACTT|ACACTT
46 202 Improved ACACTT|ACACTT
47 2021 Improved ACACTT|ACACTT
48 2023 Improved ACACTT|ACACTT
49 2026 Improved ACACTT|ACACTT
50 2029 Improved ACACTT|ACACTT
51 2030 Landrace ACACTT|ACACTT
52 2031 Landrace ACACTT|ACACTT
53 2036 Improved ACACTT|ACACTT
54 2037 Improved ACACTT|ACACTT
55 2038 Improved ACACTT|ACACTT
56 2039 Improved ACACTT|ACACTT
57 204 Improved ACACTT|ACACTT
58 2042 Improved ACACTT|ACACTT
59 2043 Improved ACACTT|ACACTT
60 2048 Improved ACACTT|ACACTT
61 2049 Improved ACACTT|ACACTT
62 205 Improved ACACTT|ACACTT
63 2050 Improved ACACTT|ACACTT
64 2052 Improved ACACTT|ACACTT
65 2054 Improved ACACTT|ACACTT
66 2056 Improved ACACTT|ACACTT
67 2059 Improved ACACTT|ACACTT
68 206 Improved ACACTT|ACACTT
69 2064 Improved ACACTT|ACACTT
70 2065 Improved ACACTT|ACACTT
71 2067 Improved ACACTT|ACACTT
72 2068 Improved ACACTT|ACACTT
73 2069 Improved ACACTT|ACACTT
74 2071 Improved ACACTT|ACACTT
75 2074 Improved ACACTT|ACACTT
76 2075 Improved ACACTT|ACACTT
77 2076 Improved ACACTT|ACACTT
78 2080 Improved ACACTT|ACACTT
79 2081 Improved ACACTT|ACACTT
80 2082 Improved ACACTT|ACACTT
81 2086 Improved ACACTT|ACACTT
82 2088 Improved ACACTT|ACACTT
83 260 Wild sorghum N|N
84 261 Improved ACACTT|ACACTT
85 262 Improved ACACTT|ACACTT
86 263 Improved ACACTT|ACACTT
87 286 Improved ACACTT|ACACTT
88 29 Improved ACACTT|ACACTT
89 3 Improved ACACTT|ACACTT
90 302546 S.propinquum ACACTT|ACACTT
91 31 Improved ACACTT|ACACTT
92 32 Improved ACACTT|ACACTT
93 34 Improved ACACTT|ACACTT
94 346 Landrace ACACTT|ACACTT
95 348 Wild sorghum ACACTT|ACACTT
96 353 Wild sorghum ACACTT|ACACTT
97 355 Wild sorghum ACACTT|ACACTT
98 357 Wild sorghum ACACTT|ACACTT
99 364 Wild sorghum ACACTT|ACACTT
100 367 Landrace ACACTT|ACACTT
101 s37 S.propinquum ACACTT|ACACTT
102 s38 S.propinquum ACACTT|ACACTT
103 370 Landrace ACACTT|ACACTT
104 377 Wild sorghum ACACTT|ACACTT
105 392 Wild sorghum ACACTT|ACACTT
106 394 Wild sorghum ACACTT|ACACTT
107 40 Improved ACACTT|ACACTT
108 42 Improved ACACTT|ACACTT
109 43 Improved ACACTT|ACACTT
110 45 Improved ACACTT|ACACTT
111 47 Improved ACACTT|ACACTT
112 48 Improved ACACTT|ACACTT
113 51 Improved ACACTT|ACACTT
114 53 Improved ACACTT|ACACTT
115 56 Improved ACACTT|A
116 61 Improved ACACTT|ACACTT
117 62 Improved ACACTT|ACACTT
118 66 Landrace ACACTT|ACACTT
119 67 Improved ACACTT|ACACTT
120 68 Improved ACACTT|ACACTT
121 70 Improved ACACTT|ACACTT
122 73 Improved ACACTT|ACACTT
123 75 Improved ACACTT|ACACTT
124 88 Improved ACACTT|A
125 89 Improved ACACTT|ACACTT
126 91 Improved ACACTT|A
127 92 Improved ACACTT|ACACTT
128 93 Improved ACACTT|ACACTT
129 94 Improved ACACTT|A
130 95 Improved ACACTT|ACACTT
131 96 Improved ACACTT|ACACTT
132 97 Improved ACACTT|ACACTT
133 s1 Improved ACACTT|ACACTT
134 s36 Wild sorghum ACACTT|ACACTT
135 s2 Landrace ACACTT|ACACTT
136 s3 Improved ACACTT|ACACTT
137 s32 Improved ACACTT|ACACTT
138 s43 Weedy ACACTT|ACACTT
139 s40 Landrace ACACTT|ACACTT
140 s41 Weedy ACACTT|ACACTT
141 s39 Landrace ACACTT|ACACTT
142 s42 Landrace ACACTT|ACACTT
143 s47 Improved ACACTT|ACACTT
144 s5 Landrace ACACTT|ACACTT
145 GW102 Landrace ACACTT|ACACTT
146 GW103 Landrace ACACTT|ACACTT
147 GW104 Landrace ACACTT|ACACTT
148 GW105 Landrace ACACTT|ACACTT
149 GW16 Landrace ACACTT|ACACTT
150 GW2 Landrace ACACTT|ACACTT
151 GW34 Landrace ACACTT|ACACTT
152 GW37 Landrace ACACTT|ACACTT
153 GW58 Landrace ACACTT|ACACTT
154 GW59 Landrace ACACTT|ACACTT
155 GW9 Landrace ACACTT|ACACTT
156 s4 Weedy ACACTT|ACACTT
157 s6 Improved ACACTT|ACACTT
158 s7 Landrace ACACTT|ACACTT
159 s8 Landrace ACACTT|ACACTT
160 s9 Landrace ACACTT|ACACTT
161 J101 Landrace ACACTT|ACACTT
162 J103 Improved ACACTT|ACACTT
163 J112 Landrace ACACTT|ACACTT
164 J113 Improved ACACTT|ACACTT
165 J129 Improved ACACTT|ACACTT
166 J130 Improved ACACTT|ACACTT
167 J136 Improved ACACTT|ACACTT
168 J152 Improved ACACTT|ACACTT
169 J2 Landrace ACACTT|ACACTT
170 J20 Landrace ACACTT|ACACTT
171 J4 Landrace ACACTT|ACACTT
172 J42 Landrace ACACTT|ACACTT
173 J44 Landrace ACACTT|ACACTT
174 J49 Landrace ACACTT|ACACTT
175 J52 Landrace ACACTT|ACACTT
176 J53 Landrace ACACTT|ACACTT
177 J54 Landrace ACACTT|ACACTT
178 J57 Landrace ACACTT|ACACTT
179 J59 Landrace ACACTT|ACACTT
180 J64 Landrace ACACTT|ACACTT
181 J66 Landrace ACACTT|ACACTT
182 J67 Landrace ACACTT|ACACTT
183 J69 Landrace ACACTT|ACACTT
184 J87 Landrace ACACTT|ACACTT
185 J99 Landrace ACACTT|ACACTT
186 s45 Landrace ACACTT|ACACTT
187 s11 Improved ACACTT|ACACTT
188 s10 Improved ACACTT|ACACTT
189 s46 Improved ACACTT|ACACTT
190 s12 Improved ACACTT|ACACTT
191 s13 Landrace ACACTT|ACACTT
192 MHMD Landrace ACACTT|ACACTT
193 s14 Improved ACACTT|ACACTT
194 s15 Improved ACACTT|ACACTT
195 s34 Weedy ACACTT|ACACTT
196 s33 Wild sorghum ACACTT|ACACTT
197 s21 Wild sorghum ACACTT|ACACTT
198 s16 Wild sorghum ACACTT|ACACTT
199 s44 Improved ACACTT|ACACTT
200 s35 Landrace ACACTT|ACACTT
201 s31 Wild sorghum ACACTT|ACACTT
202 s17 Improved ACACTT|ACACTT
203 s18 Improved ACACTT|ACACTT
204 s20 Improved ACACTT|ACACTT
205 s19 Improved ACACTT|ACACTT
206 s22 Landrace ACACTT|ACACTT
207 s23 Landrace ACACTT|ACACTT
208 s24 Landrace ACACTT|ACACTT
209 s25 Landrace ACACTT|ACACTT
210 s26 Landrace ACACTT|ACACTT
211 s27 Landrace ACACTT|ACACTT
212 s28 Landrace ACACTT|ACACTT
213 s29 Landrace ACACTT|ACACTT
214 s30 Landrace ACACTT|ACACTT
215 SL25 Wild sorghum ACACTT|ACACTT
216 SL105 Wild sorghum ACACTT|ACACTT
217 SL108 Wild sorghum ACACTT|ACACTT
218 SL109 Wild sorghum ACACTT|ACACTT
219 SL12 Wild sorghum ACACTT|ACACTT
220 SL129 Wild sorghum ACACTT|ACACTT
221 SL130 Wild sorghum ACACTT|ACACTT
222 SL135 Wild sorghum ACACTT|ACACTT
223 SL136 Wild sorghum ACACTT|ACACTT
224 SL137 Wild sorghum ACACTT|ACACTT
225 SL138 Wild sorghum ACACTT|ACACTT
226 SL140 Wild sorghum ACACTT|ACACTT
227 SL141 Wild sorghum ACACTT|ACACTT
228 SL19 Wild sorghum ACACTT|ACACTT
229 SL28 Wild sorghum ACACTT|ACACTT
230 SL32 Wild sorghum ACACTT|ACACTT
231 SL35 Wild sorghum ACACTT|ACACTT
232 SL36 Wild sorghum ACACTT|ACACTT
233 SL37 Wild sorghum ACACTT|ACACTT
234 SL39 Wild sorghum ACACTT|ACACTT
235 SL41 Wild sorghum ACACTT|ACACTT
236 SL43 Wild sorghum ACACTT|ACACTT
237 SL47 Wild sorghum ACACTT|ACACTT
238 SL49 Wild sorghum ACACTT|ACACTT
239 SL51 Wild sorghum ACACTT|ACACTT
240 SL53 Wild sorghum ACACTT|ACACTT
241 SL62 Wild sorghum ACACTT|ACACTT
242 SL83 Wild sorghum ACACTT|ACACTT
243 SL97 Landrace ACACTT|ACACTT
244 s48 Improved ACACTT|ACACTT
245 Tu13 Wild sorghum ACACTT|ACACTT
246 Tu14 Wild sorghum ACACTT|ACACTT
247 Tu30 Wild sorghum ACACTT|ACACTT
248 Tu5 Wild sorghum ACACTT|ACACTT
249 WSC5 Landrace ACACTT|ACACTT
250 WSC15 Landrace ACACTT|ACACTT
251 WSC19 Landrace ACACTT|ACACTT
252 WSC30 Landrace ACACTT|ACACTT
253 WSC52 Landrace ACACTT|ACACTT
254 WSC6 Landrace N|N
255 WSC61 Landrace ACACTT|ACACTT
256 WSC71 Improved ACACTT|ACACTT
257 WSC72 Landrace ACACTT|ACACTT
258 WSC79 Landrace ACACTT|A
259 WSC94 Landrace ACACTT|ACACTT
260 WSC99 Landrace ACACTT|ACACTT
261 WSC100 Landrace ACACTT|ACACTT
262 WSC104 Landrace ACACTT|ACACTT
263 WSC105 Landrace ACACTT|ACACTT
264 WSC12 Landrace ACACTT|ACACTT
265 WSC13 Landrace ACACTT|ACACTT
266 WSC16 Landrace ACACTT|ACACTT
267 WSC17 Landrace ACACTT|ACACTT
268 WSC18 Landrace ACACTT|ACACTT
269 WSC20 Landrace ACACTT|ACACTT
270 WSC24 Landrace ACACTT|ACACTT
271 WSC25 Landrace ACACTT|ACACTT
272 WSC29 Landrace ACACTT|ACACTT
273 WSC31 Landrace ACACTT|ACACTT
274 WSC32 Landrace ACACTT|ACACTT
275 WSC34 Landrace ACACTT|ACACTT
276 WSC38 Landrace ACACTT|ACACTT
277 WSC39 Improved ACACTT|ACACTT
278 WSC40 Landrace ACACTT|ACACTT
279 WSC54 Landrace ACACTT|ACACTT
280 WSC56 Landrace ACACTT|ACACTT
281 WSC59 Landrace ACACTT|ACACTT
282 WSC68 Landrace ACACTT|ACACTT
283 WSC70 Landrace ACACTT|ACACTT
284 WSC73 Landrace ACACTT|ACACTT
285 WSC81 Landrace ACACTT|A
286 WSC85 Improved ACACTT|ACACTT
287 WSC91 Landrace ACACTT|ACACTT
288 WSC93 Landrace ACACTT|ACACTT
289 WSC98 Landrace ACACTT|ACACTT

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825581 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825581 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825581 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825581 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825581 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825581 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

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