sorgsd

Variation ID : sbi33825582

Variation Detail

Variation ID	sbi33825582
Type	INDEL
Position	Chr01 39618-39620
Ref /Alleles	TGG/ T
MAF	T: 0.004
5' Flank	ATTATGGTTTGGTGTACTTAGTCCTTAAAT
3' Flank	TATTGATCTTACCGGTGGCGACAACAAGTG

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	TGG\|TGG
2	103	Improved	TGG\|TGG
3	107	Improved	TGG\|TGG
4	11	Improved	TGG\|TGG
5	110	Improved	TGG\|TGG
6	123	Landrace	TGG\|TGG
7	131	Improved	TGG\|TGG
8	132	Improved	TGG\|TGG
9	135	Improved	TGG\|TGG
10	137	Improved	TGG\|TGG
11	138	Improved	TGG\|TGG
12	14	Improved	TGG\|TGG
13	140	Improved	TGG\|TGG
14	141	Improved	TGG\|TGG
15	144	Improved	TGG\|TGG
16	150	Improved	TGG\|TGG
17	154	Improved	TGG\|TGG
18	159	Landrace	TGG\|TGG
19	16	Improved	TGG\|TGG
20	161	Landrace	TGG\|TGG
21	167	Improved	TGG\|TGG
22	168	Improved	TGG\|TGG
23	170	Improved	TGG\|TGG
24	173	Improved	TGG\|TGG
25	175	Improved	TGG\|TGG
26	176	Improved	TGG\|TGG
27	182	Landrace	TGG\|TGG
28	186	Improved	TGG\|TGG
29	190	Improved	TGG\|TGG
30	192	Improved	TGG\|TGG
31	194	Improved	TGG\|TGG
32	195	Improved	TGG\|TGG
33	197	Improved	TGG\|TGG
34	J22	Landrace	TGG\|TGG
35	J26	Landrace	TGG\|TGG
36	J5	Landrace	TGG\|TGG
37	J50	Landrace	TGG\|TGG
38	2001	Landrace	TGG\|TGG
39	2005	Improved	TGG\|TGG
40	2008	Improved	TGG\|TGG
41	2009	Landrace	TGG\|TGG
42	201	Improved	TGG\|TGG
43	2010	Landrace	TGG\|TGG
44	2016	Improved	N\|N
45	2019	Improved	TGG\|TGG
46	202	Improved	TGG\|TGG
47	2021	Improved	TGG\|TGG
48	2023	Improved	TGG\|TGG
49	2026	Improved	TGG\|TGG
50	2029	Improved	TGG\|TGG
51	2030	Landrace	N\|N
52	2031	Landrace	TGG\|TGG
53	2036	Improved	TGG\|TGG
54	2037	Improved	TGG\|TGG
55	2038	Improved	TGG\|TGG
56	2039	Improved	TGG\|TGG
57	204	Improved	TGG\|TGG
58	2042	Improved	TGG\|TGG
59	2043	Improved	TGG\|TGG
60	2048	Improved	TGG\|TGG
61	2049	Improved	TGG\|TGG
62	205	Improved	N\|N
63	2050	Improved	TGG\|TGG
64	2052	Improved	TGG\|TGG
65	2054	Improved	TGG\|TGG
66	2056	Improved	TGG\|TGG
67	2059	Improved	TGG\|TGG
68	206	Improved	TGG\|TGG
69	2064	Improved	TGG\|TGG
70	2065	Improved	TGG\|TGG
71	2067	Improved	TGG\|TGG
72	2068	Improved	TGG\|TGG
73	2069	Improved	TGG\|TGG
74	2071	Improved	TGG\|TGG
75	2074	Improved	TGG\|TGG
76	2075	Improved	TGG\|TGG
77	2076	Improved	TGG\|TGG
78	2080	Improved	TGG\|TGG
79	2081	Improved	TGG\|TGG
80	2082	Improved	TGG\|TGG
81	2086	Improved	TGG\|TGG
82	2088	Improved	TGG\|TGG
83	260	Wild sorghum	TGG\|TGG
84	261	Improved	TGG\|TGG
85	262	Improved	N\|N
86	263	Improved	TGG\|TGG
87	286	Improved	TGG\|TGG
88	29	Improved	TGG\|TGG
89	3	Improved	TGG\|TGG
90	302546	S.propinquum	TGG\|TGG
91	31	Improved	TGG\|TGG
92	32	Improved	TGG\|TGG
93	34	Improved	TGG\|TGG
94	346	Landrace	TGG\|TGG
95	348	Wild sorghum	TGG\|TGG
96	353	Wild sorghum	TGG\|TGG
97	355	Wild sorghum	TGG\|TGG
98	357	Wild sorghum	TGG\|TGG
99	364	Wild sorghum	TGG\|TGG
100	367	Landrace	TGG\|TGG
101	s37	S.propinquum	TGG\|T
102	s38	S.propinquum	TGG\|T
103	370	Landrace	TGG\|TGG
104	377	Wild sorghum	TGG\|TGG
105	392	Wild sorghum	TGG\|TGG
106	394	Wild sorghum	TGG\|TGG
107	40	Improved	TGG\|TGG
108	42	Improved	TGG\|TGG
109	43	Improved	TGG\|TGG
110	45	Improved	TGG\|TGG
111	47	Improved	N\|N
112	48	Improved	TGG\|TGG
113	51	Improved	TGG\|TGG
114	53	Improved	TGG\|TGG
115	56	Improved	TGG\|TGG
116	61	Improved	TGG\|TGG
117	62	Improved	TGG\|TGG
118	66	Landrace	TGG\|TGG
119	67	Improved	TGG\|TGG
120	68	Improved	TGG\|TGG
121	70	Improved	TGG\|TGG
122	73	Improved	TGG\|TGG
123	75	Improved	TGG\|TGG
124	88	Improved	TGG\|TGG
125	89	Improved	TGG\|TGG
126	91	Improved	TGG\|TGG
127	92	Improved	TGG\|TGG
128	93	Improved	TGG\|TGG
129	94	Improved	TGG\|TGG
130	95	Improved	N\|N
131	96	Improved	TGG\|TGG
132	97	Improved	TGG\|TGG
133	s1	Improved	TGG\|TGG
134	s36	Wild sorghum	TGG\|TGG
135	s2	Landrace	TGG\|TGG
136	s3	Improved	TGG\|TGG
137	s32	Improved	TGG\|TGG
138	s43	Weedy	TGG\|TGG
139	s40	Landrace	TGG\|TGG
140	s41	Weedy	TGG\|TGG
141	s39	Landrace	TGG\|TGG
142	s42	Landrace	TGG\|TGG
143	s47	Improved	N\|N
144	s5	Landrace	TGG\|TGG
145	GW102	Landrace	TGG\|TGG
146	GW103	Landrace	TGG\|TGG
147	GW104	Landrace	TGG\|TGG
148	GW105	Landrace	TGG\|TGG
149	GW16	Landrace	TGG\|TGG
150	GW2	Landrace	TGG\|TGG
151	GW34	Landrace	TGG\|TGG
152	GW37	Landrace	TGG\|TGG
153	GW58	Landrace	TGG\|TGG
154	GW59	Landrace	TGG\|TGG
155	GW9	Landrace	TGG\|TGG
156	s4	Weedy	TGG\|TGG
157	s6	Improved	TGG\|TGG
158	s7	Landrace	TGG\|TGG
159	s8	Landrace	TGG\|TGG
160	s9	Landrace	TGG\|TGG
161	J101	Landrace	TGG\|TGG
162	J103	Improved	TGG\|TGG
163	J112	Landrace	TGG\|TGG
164	J113	Improved	TGG\|TGG
165	J129	Improved	TGG\|TGG
166	J130	Improved	TGG\|TGG
167	J136	Improved	TGG\|TGG
168	J152	Improved	TGG\|TGG
169	J2	Landrace	TGG\|TGG
170	J20	Landrace	TGG\|TGG
171	J4	Landrace	TGG\|TGG
172	J42	Landrace	TGG\|TGG
173	J44	Landrace	TGG\|TGG
174	J49	Landrace	TGG\|TGG
175	J52	Landrace	TGG\|TGG
176	J53	Landrace	TGG\|TGG
177	J54	Landrace	TGG\|TGG
178	J57	Landrace	TGG\|TGG
179	J59	Landrace	TGG\|TGG
180	J64	Landrace	TGG\|TGG
181	J66	Landrace	TGG\|TGG
182	J67	Landrace	TGG\|TGG
183	J69	Landrace	TGG\|TGG
184	J87	Landrace	TGG\|TGG
185	J99	Landrace	TGG\|TGG
186	s45	Landrace	TGG\|TGG
187	s11	Improved	TGG\|TGG
188	s10	Improved	TGG\|TGG
189	s46	Improved	TGG\|TGG
190	s12	Improved	TGG\|TGG
191	s13	Landrace	TGG\|TGG
192	MHMD	Landrace	TGG\|TGG
193	s14	Improved	TGG\|TGG
194	s15	Improved	TGG\|TGG
195	s34	Weedy	TGG\|TGG
196	s33	Wild sorghum	TGG\|TGG
197	s21	Wild sorghum	TGG\|TGG
198	s16	Wild sorghum	TGG\|TGG
199	s44	Improved	TGG\|TGG
200	s35	Landrace	TGG\|TGG
201	s31	Wild sorghum	TGG\|TGG
202	s17	Improved	TGG\|TGG
203	s18	Improved	TGG\|TGG
204	s20	Improved	TGG\|TGG
205	s19	Improved	TGG\|TGG
206	s22	Landrace	TGG\|TGG
207	s23	Landrace	TGG\|TGG
208	s24	Landrace	TGG\|TGG
209	s25	Landrace	TGG\|TGG
210	s26	Landrace	TGG\|TGG
211	s27	Landrace	TGG\|TGG
212	s28	Landrace	TGG\|TGG
213	s29	Landrace	TGG\|TGG
214	s30	Landrace	TGG\|TGG
215	SL25	Wild sorghum	TGG\|TGG
216	SL105	Wild sorghum	TGG\|TGG
217	SL108	Wild sorghum	TGG\|TGG
218	SL109	Wild sorghum	TGG\|TGG
219	SL12	Wild sorghum	TGG\|TGG
220	SL129	Wild sorghum	TGG\|TGG
221	SL130	Wild sorghum	TGG\|TGG
222	SL135	Wild sorghum	TGG\|TGG
223	SL136	Wild sorghum	TGG\|TGG
224	SL137	Wild sorghum	TGG\|TGG
225	SL138	Wild sorghum	TGG\|TGG
226	SL140	Wild sorghum	TGG\|TGG
227	SL141	Wild sorghum	TGG\|TGG
228	SL19	Wild sorghum	TGG\|TGG
229	SL28	Wild sorghum	TGG\|TGG
230	SL32	Wild sorghum	TGG\|TGG
231	SL35	Wild sorghum	TGG\|TGG
232	SL36	Wild sorghum	TGG\|TGG
233	SL37	Wild sorghum	TGG\|TGG
234	SL39	Wild sorghum	N\|N
235	SL41	Wild sorghum	TGG\|TGG
236	SL43	Wild sorghum	N\|N
237	SL47	Wild sorghum	TGG\|TGG
238	SL49	Wild sorghum	TGG\|TGG
239	SL51	Wild sorghum	TGG\|TGG
240	SL53	Wild sorghum	N\|N
241	SL62	Wild sorghum	TGG\|TGG
242	SL83	Wild sorghum	TGG\|TGG
243	SL97	Landrace	N\|N
244	s48	Improved	TGG\|TGG
245	Tu13	Wild sorghum	TGG\|TGG
246	Tu14	Wild sorghum	TGG\|TGG
247	Tu30	Wild sorghum	TGG\|TGG
248	Tu5	Wild sorghum	TGG\|TGG
249	WSC5	Landrace	TGG\|TGG
250	WSC15	Landrace	TGG\|TGG
251	WSC19	Landrace	TGG\|TGG
252	WSC30	Landrace	TGG\|TGG
253	WSC52	Landrace	TGG\|TGG
254	WSC6	Landrace	TGG\|TGG
255	WSC61	Landrace	TGG\|TGG
256	WSC71	Improved	TGG\|TGG
257	WSC72	Landrace	TGG\|TGG
258	WSC79	Landrace	TGG\|TGG
259	WSC94	Landrace	TGG\|TGG
260	WSC99	Landrace	N\|N
261	WSC100	Landrace	TGG\|TGG
262	WSC104	Landrace	TGG\|TGG
263	WSC105	Landrace	TGG\|TGG
264	WSC12	Landrace	TGG\|TGG
265	WSC13	Landrace	TGG\|TGG
266	WSC16	Landrace	TGG\|TGG
267	WSC17	Landrace	TGG\|TGG
268	WSC18	Landrace	TGG\|TGG
269	WSC20	Landrace	TGG\|TGG
270	WSC24	Landrace	TGG\|TGG
271	WSC25	Landrace	TGG\|TGG
272	WSC29	Landrace	TGG\|TGG
273	WSC31	Landrace	TGG\|TGG
274	WSC32	Landrace	TGG\|TGG
275	WSC34	Landrace	TGG\|TGG
276	WSC38	Landrace	TGG\|TGG
277	WSC39	Improved	TGG\|TGG
278	WSC40	Landrace	TGG\|TGG
279	WSC54	Landrace	TGG\|TGG
280	WSC56	Landrace	TGG\|TGG
281	WSC59	Landrace	TGG\|TGG
282	WSC68	Landrace	TGG\|TGG
283	WSC70	Landrace	TGG\|TGG
284	WSC73	Landrace	TGG\|TGG
285	WSC81	Landrace	TGG\|TGG
286	WSC85	Improved	TGG\|TGG
287	WSC91	Landrace	TGG\|TGG
288	WSC93	Landrace	TGG\|TGG
289	WSC98	Landrace	TGG\|TGG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825582	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825582	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825582	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825582	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825582	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825582	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

Genome Browser