sorgsd

Variation ID : sbi33825592

Variation Detail

Variation ID	sbi33825592
Type	INDEL
Position	Chr01 40524-40528
Ref /Alleles	TACGA/ T
MAF	T: 0.004
5' Flank	CATTTGACTTTGACTGCTGCAGCGGAATGA
3' Flank	ATATAAACGGACGATTTGATCAATAATTTA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	TACGA\|TACGA
2	103	Improved	TACGA\|TACGA
3	107	Improved	TACGA\|TACGA
4	11	Improved	N\|N
5	110	Improved	TACGA\|TACGA
6	123	Landrace	N\|N
7	131	Improved	TACGA\|TACGA
8	132	Improved	TACGA\|TACGA
9	135	Improved	TACGA\|TACGA
10	137	Improved	TACGA\|TACGA
11	138	Improved	TACGA\|TACGA
12	14	Improved	N\|N
13	140	Improved	TACGA\|TACGA
14	141	Improved	TACGA\|TACGA
15	144	Improved	TACGA\|TACGA
16	150	Improved	TACGA\|TACGA
17	154	Improved	TACGA\|TACGA
18	159	Landrace	N\|N
19	16	Improved	N\|N
20	161	Landrace	TACGA\|TACGA
21	167	Improved	TACGA\|TACGA
22	168	Improved	TACGA\|TACGA
23	170	Improved	N\|N
24	173	Improved	TACGA\|TACGA
25	175	Improved	TACGA\|TACGA
26	176	Improved	TACGA\|TACGA
27	182	Landrace	TACGA\|TACGA
28	186	Improved	N\|N
29	190	Improved	N\|N
30	192	Improved	TACGA\|TACGA
31	194	Improved	TACGA\|TACGA
32	195	Improved	TACGA\|TACGA
33	197	Improved	TACGA\|TACGA
34	J22	Landrace	TACGA\|TACGA
35	J26	Landrace	TACGA\|TACGA
36	J5	Landrace	TACGA\|TACGA
37	J50	Landrace	TACGA\|TACGA
38	2001	Landrace	TACGA\|TACGA
39	2005	Improved	TACGA\|TACGA
40	2008	Improved	TACGA\|TACGA
41	2009	Landrace	TACGA\|TACGA
42	201	Improved	N\|N
43	2010	Landrace	TACGA\|TACGA
44	2016	Improved	N\|N
45	2019	Improved	TACGA\|TACGA
46	202	Improved	TACGA\|TACGA
47	2021	Improved	TACGA\|TACGA
48	2023	Improved	TACGA\|TACGA
49	2026	Improved	TACGA\|TACGA
50	2029	Improved	TACGA\|TACGA
51	2030	Landrace	TACGA\|TACGA
52	2031	Landrace	TACGA\|TACGA
53	2036	Improved	N\|N
54	2037	Improved	TACGA\|TACGA
55	2038	Improved	N\|N
56	2039	Improved	TACGA\|TACGA
57	204	Improved	N\|N
58	2042	Improved	TACGA\|TACGA
59	2043	Improved	TACGA\|TACGA
60	2048	Improved	N\|N
61	2049	Improved	TACGA\|TACGA
62	205	Improved	N\|N
63	2050	Improved	N\|N
64	2052	Improved	TACGA\|TACGA
65	2054	Improved	N\|N
66	2056	Improved	TACGA\|TACGA
67	2059	Improved	TACGA\|TACGA
68	206	Improved	TACGA\|TACGA
69	2064	Improved	TACGA\|TACGA
70	2065	Improved	TACGA\|TACGA
71	2067	Improved	TACGA\|TACGA
72	2068	Improved	N\|N
73	2069	Improved	TACGA\|TACGA
74	2071	Improved	TACGA\|TACGA
75	2074	Improved	N\|N
76	2075	Improved	TACGA\|TACGA
77	2076	Improved	TACGA\|TACGA
78	2080	Improved	N\|N
79	2081	Improved	TACGA\|TACGA
80	2082	Improved	TACGA\|TACGA
81	2086	Improved	TACGA\|TACGA
82	2088	Improved	TACGA\|TACGA
83	260	Wild sorghum	N\|N
84	261	Improved	N\|N
85	262	Improved	N\|N
86	263	Improved	TACGA\|TACGA
87	286	Improved	N\|N
88	29	Improved	TACGA\|TACGA
89	3	Improved	N\|N
90	302546	S.propinquum	TACGA\|TACGA
91	31	Improved	TACGA\|TACGA
92	32	Improved	TACGA\|TACGA
93	34	Improved	N\|N
94	346	Landrace	N\|N
95	348	Wild sorghum	TACGA\|TACGA
96	353	Wild sorghum	TACGA\|TACGA
97	355	Wild sorghum	TACGA\|TACGA
98	357	Wild sorghum	N\|N
99	364	Wild sorghum	N\|N
100	367	Landrace	TACGA\|TACGA
101	s37	S.propinquum	TACGA\|TACGA
102	s38	S.propinquum	TACGA\|TACGA
103	370	Landrace	N\|N
104	377	Wild sorghum	N\|N
105	392	Wild sorghum	N\|N
106	394	Wild sorghum	TACGA\|TACGA
107	40	Improved	N\|N
108	42	Improved	N\|N
109	43	Improved	TACGA\|TACGA
110	45	Improved	TACGA\|TACGA
111	47	Improved	N\|N
112	48	Improved	TACGA\|TACGA
113	51	Improved	TACGA\|TACGA
114	53	Improved	TACGA\|TACGA
115	56	Improved	TACGA\|TACGA
116	61	Improved	TACGA\|TACGA
117	62	Improved	TACGA\|TACGA
118	66	Landrace	TACGA\|TACGA
119	67	Improved	N\|N
120	68	Improved	N\|N
121	70	Improved	TACGA\|TACGA
122	73	Improved	TACGA\|TACGA
123	75	Improved	TACGA\|TACGA
124	88	Improved	TACGA\|TACGA
125	89	Improved	TACGA\|TACGA
126	91	Improved	TACGA\|TACGA
127	92	Improved	TACGA\|TACGA
128	93	Improved	TACGA\|TACGA
129	94	Improved	TACGA\|TACGA
130	95	Improved	N\|N
131	96	Improved	TACGA\|TACGA
132	97	Improved	TACGA\|TACGA
133	s1	Improved	TACGA\|TACGA
134	s36	Wild sorghum	TACGA\|TACGA
135	s2	Landrace	TACGA\|TACGA
136	s3	Improved	TACGA\|TACGA
137	s32	Improved	TACGA\|TACGA
138	s43	Weedy	TACGA\|TACGA
139	s40	Landrace	TACGA\|TACGA
140	s41	Weedy	TACGA\|TACGA
141	s39	Landrace	TACGA\|TACGA
142	s42	Landrace	TACGA\|TACGA
143	s47	Improved	TACGA\|TACGA
144	s5	Landrace	TACGA\|TACGA
145	GW102	Landrace	TACGA\|TACGA
146	GW103	Landrace	TACGA\|TACGA
147	GW104	Landrace	TACGA\|TACGA
148	GW105	Landrace	TACGA\|TACGA
149	GW16	Landrace	TACGA\|TACGA
150	GW2	Landrace	TACGA\|TACGA
151	GW34	Landrace	TACGA\|TACGA
152	GW37	Landrace	TACGA\|TACGA
153	GW58	Landrace	TACGA\|TACGA
154	GW59	Landrace	TACGA\|TACGA
155	GW9	Landrace	TACGA\|TACGA
156	s4	Weedy	TACGA\|TACGA
157	s6	Improved	TACGA\|TACGA
158	s7	Landrace	TACGA\|TACGA
159	s8	Landrace	TACGA\|TACGA
160	s9	Landrace	TACGA\|TACGA
161	J101	Landrace	TACGA\|TACGA
162	J103	Improved	TACGA\|TACGA
163	J112	Landrace	TACGA\|TACGA
164	J113	Improved	TACGA\|TACGA
165	J129	Improved	TACGA\|TACGA
166	J130	Improved	N\|N
167	J136	Improved	N\|N
168	J152	Improved	N\|N
169	J2	Landrace	N\|N
170	J20	Landrace	TACGA\|TACGA
171	J4	Landrace	TACGA\|TACGA
172	J42	Landrace	N\|N
173	J44	Landrace	TACGA\|TACGA
174	J49	Landrace	N\|N
175	J52	Landrace	TACGA\|TACGA
176	J53	Landrace	TACGA\|TACGA
177	J54	Landrace	N\|N
178	J57	Landrace	TACGA\|TACGA
179	J59	Landrace	TACGA\|TACGA
180	J64	Landrace	TACGA\|TACGA
181	J66	Landrace	TACGA\|TACGA
182	J67	Landrace	N\|N
183	J69	Landrace	TACGA\|TACGA
184	J87	Landrace	TACGA\|TACGA
185	J99	Landrace	N\|N
186	s45	Landrace	TACGA\|TACGA
187	s11	Improved	TACGA\|TACGA
188	s10	Improved	TACGA\|TACGA
189	s46	Improved	TACGA\|TACGA
190	s12	Improved	TACGA\|TACGA
191	s13	Landrace	TACGA\|TACGA
192	MHMD	Landrace	TACGA\|TACGA
193	s14	Improved	TACGA\|TACGA
194	s15	Improved	TACGA\|TACGA
195	s34	Weedy	TACGA\|TACGA
196	s33	Wild sorghum	TACGA\|TACGA
197	s21	Wild sorghum	TACGA\|TACGA
198	s16	Wild sorghum	TACGA\|TACGA
199	s44	Improved	TACGA\|TACGA
200	s35	Landrace	TACGA\|TACGA
201	s31	Wild sorghum	TACGA\|TACGA
202	s17	Improved	TACGA\|TACGA
203	s18	Improved	TACGA\|TACGA
204	s20	Improved	TACGA\|TACGA
205	s19	Improved	TACGA\|TACGA
206	s22	Landrace	TACGA\|TACGA
207	s23	Landrace	TACGA\|TACGA
208	s24	Landrace	TACGA\|TACGA
209	s25	Landrace	TACGA\|TACGA
210	s26	Landrace	TACGA\|TACGA
211	s27	Landrace	TACGA\|TACGA
212	s28	Landrace	TACGA\|TACGA
213	s29	Landrace	TACGA\|TACGA
214	s30	Landrace	TACGA\|TACGA
215	SL25	Wild sorghum	N\|N
216	SL105	Wild sorghum	TACGA\|TACGA
217	SL108	Wild sorghum	TACGA\|TACGA
218	SL109	Wild sorghum	TACGA\|TACGA
219	SL12	Wild sorghum	TACGA\|TACGA
220	SL129	Wild sorghum	TACGA\|TACGA
221	SL130	Wild sorghum	TACGA\|TACGA
222	SL135	Wild sorghum	TACGA\|TACGA
223	SL136	Wild sorghum	N\|N
224	SL137	Wild sorghum	TACGA\|TACGA
225	SL138	Wild sorghum	TACGA\|TACGA
226	SL140	Wild sorghum	TACGA\|TACGA
227	SL141	Wild sorghum	TACGA\|TACGA
228	SL19	Wild sorghum	TACGA\|TACGA
229	SL28	Wild sorghum	N\|N
230	SL32	Wild sorghum	T\|T
231	SL35	Wild sorghum	TACGA\|TACGA
232	SL36	Wild sorghum	TACGA\|TACGA
233	SL37	Wild sorghum	TACGA\|TACGA
234	SL39	Wild sorghum	TACGA\|TACGA
235	SL41	Wild sorghum	TACGA\|TACGA
236	SL43	Wild sorghum	TACGA\|TACGA
237	SL47	Wild sorghum	TACGA\|TACGA
238	SL49	Wild sorghum	TACGA\|TACGA
239	SL51	Wild sorghum	TACGA\|TACGA
240	SL53	Wild sorghum	TACGA\|TACGA
241	SL62	Wild sorghum	TACGA\|TACGA
242	SL83	Wild sorghum	TACGA\|TACGA
243	SL97	Landrace	TACGA\|TACGA
244	s48	Improved	TACGA\|TACGA
245	Tu13	Wild sorghum	N\|N
246	Tu14	Wild sorghum	TACGA\|TACGA
247	Tu30	Wild sorghum	TACGA\|TACGA
248	Tu5	Wild sorghum	TACGA\|TACGA
249	WSC5	Landrace	TACGA\|TACGA
250	WSC15	Landrace	N\|N
251	WSC19	Landrace	TACGA\|TACGA
252	WSC30	Landrace	TACGA\|TACGA
253	WSC52	Landrace	TACGA\|TACGA
254	WSC6	Landrace	TACGA\|TACGA
255	WSC61	Landrace	N\|N
256	WSC71	Improved	TACGA\|TACGA
257	WSC72	Landrace	N\|N
258	WSC79	Landrace	TACGA\|TACGA
259	WSC94	Landrace	TACGA\|TACGA
260	WSC99	Landrace	N\|N
261	WSC100	Landrace	TACGA\|TACGA
262	WSC104	Landrace	TACGA\|TACGA
263	WSC105	Landrace	TACGA\|TACGA
264	WSC12	Landrace	TACGA\|TACGA
265	WSC13	Landrace	TACGA\|TACGA
266	WSC16	Landrace	TACGA\|TACGA
267	WSC17	Landrace	TACGA\|TACGA
268	WSC18	Landrace	TACGA\|TACGA
269	WSC20	Landrace	TACGA\|TACGA
270	WSC24	Landrace	TACGA\|TACGA
271	WSC25	Landrace	TACGA\|TACGA
272	WSC29	Landrace	TACGA\|TACGA
273	WSC31	Landrace	TACGA\|TACGA
274	WSC32	Landrace	TACGA\|TACGA
275	WSC34	Landrace	TACGA\|TACGA
276	WSC38	Landrace	TACGA\|TACGA
277	WSC39	Improved	TACGA\|TACGA
278	WSC40	Landrace	TACGA\|TACGA
279	WSC54	Landrace	TACGA\|TACGA
280	WSC56	Landrace	TACGA\|TACGA
281	WSC59	Landrace	TACGA\|TACGA
282	WSC68	Landrace	TACGA\|TACGA
283	WSC70	Landrace	TACGA\|TACGA
284	WSC73	Landrace	TACGA\|TACGA
285	WSC81	Landrace	TACGA\|TACGA
286	WSC85	Improved	N\|N
287	WSC91	Landrace	TACGA\|TACGA
288	WSC93	Landrace	N\|N
289	WSC98	Landrace	TACGA\|TACGA

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825592	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825592	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825592	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825592	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825592	Sobic.001G000400	intron variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825592	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

Genome Browser