Variation ID : sbi33825614

Variation Detail



Variation ID sbi33825614
Type INDEL
Position Chr01 41302-41303
Ref /Alleles AC/ A
MAF A: 0.017
5' Flank TGGAGAGTGCTCAGTATCATTTTGTCCAAC
3' Flank CCCCTTTTCCTTGCAAATGTCAACTTTACT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved N|N
2 103 Improved N|N
3 107 Improved AC|AC
4 11 Improved N|N
5 110 Improved N|N
6 123 Landrace N|N
7 131 Improved N|N
8 132 Improved AC|AC
9 135 Improved N|N
10 137 Improved AC|AC
11 138 Improved AC|AC
12 14 Improved N|N
13 140 Improved N|N
14 141 Improved N|N
15 144 Improved N|N
16 150 Improved AC|AC
17 154 Improved AC|AC
18 159 Landrace N|N
19 16 Improved N|N
20 161 Landrace AC|AC
21 167 Improved AC|AC
22 168 Improved N|N
23 170 Improved N|N
24 173 Improved AC|AC
25 175 Improved AC|AC
26 176 Improved AC|AC
27 182 Landrace AC|AC
28 186 Improved N|N
29 190 Improved N|N
30 192 Improved AC|AC
31 194 Improved AC|AC
32 195 Improved AC|AC
33 197 Improved AC|AC
34 J22 Landrace AC|AC
35 J26 Landrace N|N
36 J5 Landrace AC|AC
37 J50 Landrace N|N
38 2001 Landrace N|N
39 2005 Improved N|N
40 2008 Improved N|N
41 2009 Landrace N|N
42 201 Improved N|N
43 2010 Landrace AC|AC
44 2016 Improved AC|AC
45 2019 Improved AC|AC
46 202 Improved AC|AC
47 2021 Improved N|N
48 2023 Improved AC|AC
49 2026 Improved N|N
50 2029 Improved AC|AC
51 2030 Landrace N|N
52 2031 Landrace AC|AC
53 2036 Improved N|N
54 2037 Improved AC|AC
55 2038 Improved N|N
56 2039 Improved N|N
57 204 Improved N|N
58 2042 Improved N|N
59 2043 Improved N|N
60 2048 Improved N|N
61 2049 Improved AC|AC
62 205 Improved N|N
63 2050 Improved AC|AC
64 2052 Improved N|N
65 2054 Improved AC|AC
66 2056 Improved AC|AC
67 2059 Improved N|N
68 206 Improved N|N
69 2064 Improved N|N
70 2065 Improved AC|AC
71 2067 Improved AC|AC
72 2068 Improved N|N
73 2069 Improved N|N
74 2071 Improved N|N
75 2074 Improved AC|AC
76 2075 Improved AC|AC
77 2076 Improved AC|AC
78 2080 Improved N|N
79 2081 Improved AC|AC
80 2082 Improved N|N
81 2086 Improved AC|AC
82 2088 Improved AC|AC
83 260 Wild sorghum AC|AC
84 261 Improved AC|AC
85 262 Improved N|N
86 263 Improved N|N
87 286 Improved N|N
88 29 Improved AC|AC
89 3 Improved N|N
90 302546 S.propinquum N|N
91 31 Improved AC|AC
92 32 Improved AC|AC
93 34 Improved N|N
94 346 Landrace N|N
95 348 Wild sorghum A|A
96 353 Wild sorghum AC|AC
97 355 Wild sorghum AC|AC
98 357 Wild sorghum AC|AC
99 364 Wild sorghum AC|AC
100 367 Landrace N|N
101 s37 S.propinquum N|N
102 s38 S.propinquum N|N
103 370 Landrace N|N
104 377 Wild sorghum N|N
105 392 Wild sorghum AC|AC
106 394 Wild sorghum AC|AC
107 40 Improved AC|AC
108 42 Improved N|N
109 43 Improved AC|AC
110 45 Improved N|N
111 47 Improved N|N
112 48 Improved N|N
113 51 Improved AC|AC
114 53 Improved N|N
115 56 Improved N|N
116 61 Improved AC|AC
117 62 Improved AC|AC
118 66 Landrace N|N
119 67 Improved A|A
120 68 Improved AC|AC
121 70 Improved AC|AC
122 73 Improved AC|AC
123 75 Improved N|N
124 88 Improved N|N
125 89 Improved AC|AC
126 91 Improved N|N
127 92 Improved N|N
128 93 Improved N|N
129 94 Improved N|N
130 95 Improved N|N
131 96 Improved N|N
132 97 Improved AC|AC
133 s1 Improved AC|AC
134 s36 Wild sorghum AC|AC
135 s2 Landrace AC|AC
136 s3 Improved AC|AC
137 s32 Improved AC|AC
138 s43 Weedy AC|AC
139 s40 Landrace AC|AC
140 s41 Weedy AC|AC
141 s39 Landrace AC|AC
142 s42 Landrace AC|AC
143 s47 Improved AC|AC
144 s5 Landrace AC|AC
145 GW102 Landrace AC|AC
146 GW103 Landrace N|N
147 GW104 Landrace AC|AC
148 GW105 Landrace N|N
149 GW16 Landrace AC|AC
150 GW2 Landrace AC|AC
151 GW34 Landrace AC|AC
152 GW37 Landrace AC|AC
153 GW58 Landrace AC|AC
154 GW59 Landrace AC|AC
155 GW9 Landrace AC|AC
156 s4 Weedy AC|AC
157 s6 Improved AC|AC
158 s7 Landrace AC|AC
159 s8 Landrace AC|AC
160 s9 Landrace AC|AC
161 J101 Landrace AC|AC
162 J103 Improved AC|AC
163 J112 Landrace AC|AC
164 J113 Improved AC|AC
165 J129 Improved N|N
166 J130 Improved N|N
167 J136 Improved N|N
168 J152 Improved N|N
169 J2 Landrace AC|AC
170 J20 Landrace AC|AC
171 J4 Landrace N|N
172 J42 Landrace N|N
173 J44 Landrace AC|AC
174 J49 Landrace AC|AC
175 J52 Landrace N|N
176 J53 Landrace N|N
177 J54 Landrace AC|AC
178 J57 Landrace N|N
179 J59 Landrace N|N
180 J64 Landrace AC|AC
181 J66 Landrace N|N
182 J67 Landrace N|N
183 J69 Landrace AC|AC
184 J87 Landrace AC|AC
185 J99 Landrace N|N
186 s45 Landrace AC|AC
187 s11 Improved A|A
188 s10 Improved AC|AC
189 s46 Improved AC|AC
190 s12 Improved AC|AC
191 s13 Landrace AC|AC
192 MHMD Landrace AC|AC
193 s14 Improved AC|AC
194 s15 Improved AC|AC
195 s34 Weedy AC|AC
196 s33 Wild sorghum AC|AC
197 s21 Wild sorghum AC|AC
198 s16 Wild sorghum AC|AC
199 s44 Improved AC|AC
200 s35 Landrace AC|AC
201 s31 Wild sorghum AC|AC
202 s17 Improved AC|AC
203 s18 Improved AC|AC
204 s20 Improved AC|AC
205 s19 Improved AC|AC
206 s22 Landrace AC|AC
207 s23 Landrace AC|AC
208 s24 Landrace AC|AC
209 s25 Landrace AC|AC
210 s26 Landrace AC|AC
211 s27 Landrace AC|AC
212 s28 Landrace AC|AC
213 s29 Landrace AC|AC
214 s30 Landrace AC|AC
215 SL25 Wild sorghum AC|AC
216 SL105 Wild sorghum AC|AC
217 SL108 Wild sorghum AC|AC
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum AC|AC
220 SL129 Wild sorghum AC|AC
221 SL130 Wild sorghum AC|AC
222 SL135 Wild sorghum AC|AC
223 SL136 Wild sorghum AC|AC
224 SL137 Wild sorghum AC|AC
225 SL138 Wild sorghum AC|AC
226 SL140 Wild sorghum AC|AC
227 SL141 Wild sorghum AC|AC
228 SL19 Wild sorghum AC|AC
229 SL28 Wild sorghum AC|AC
230 SL32 Wild sorghum AC|AC
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum AC|AC
233 SL37 Wild sorghum AC|AC
234 SL39 Wild sorghum AC|AC
235 SL41 Wild sorghum N|N
236 SL43 Wild sorghum AC|AC
237 SL47 Wild sorghum AC|AC
238 SL49 Wild sorghum AC|AC
239 SL51 Wild sorghum AC|AC
240 SL53 Wild sorghum AC|AC
241 SL62 Wild sorghum AC|AC
242 SL83 Wild sorghum N|N
243 SL97 Landrace N|N
244 s48 Improved AC|AC
245 Tu13 Wild sorghum AC|AC
246 Tu14 Wild sorghum AC|AC
247 Tu30 Wild sorghum AC|AC
248 Tu5 Wild sorghum N|N
249 WSC5 Landrace AC|AC
250 WSC15 Landrace AC|AC
251 WSC19 Landrace N|N
252 WSC30 Landrace AC|AC
253 WSC52 Landrace N|N
254 WSC6 Landrace AC|AC
255 WSC61 Landrace N|N
256 WSC71 Improved N|N
257 WSC72 Landrace N|N
258 WSC79 Landrace AC|AC
259 WSC94 Landrace N|N
260 WSC99 Landrace AC|AC
261 WSC100 Landrace AC|AC
262 WSC104 Landrace AC|AC
263 WSC105 Landrace AC|AC
264 WSC12 Landrace AC|AC
265 WSC13 Landrace N|N
266 WSC16 Landrace AC|AC
267 WSC17 Landrace N|N
268 WSC18 Landrace AC|AC
269 WSC20 Landrace N|N
270 WSC24 Landrace N|N
271 WSC25 Landrace N|N
272 WSC29 Landrace AC|AC
273 WSC31 Landrace AC|AC
274 WSC32 Landrace N|N
275 WSC34 Landrace N|N
276 WSC38 Landrace AC|AC
277 WSC39 Improved N|N
278 WSC40 Landrace AC|AC
279 WSC54 Landrace AC|AC
280 WSC56 Landrace N|N
281 WSC59 Landrace N|N
282 WSC68 Landrace AC|AC
283 WSC70 Landrace N|N
284 WSC73 Landrace AC|AC
285 WSC81 Landrace AC|AC
286 WSC85 Improved AC|AC
287 WSC91 Landrace AC|AC
288 WSC93 Landrace AC|AC
289 WSC98 Landrace AC|AC

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825614 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.2 mRNA Sobic.001G000400.2.p
sbi33825614 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.5 mRNA Sobic.001G000400.5.p
sbi33825614 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825614 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825614 Sobic.001G000400 intron variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p
sbi33825614 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.6 mRNA Sobic.001G000400.6.p

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