sorgsd

Variation ID : sbi33825652

Variation Detail

Variation ID	sbi33825652
Type	INDEL
Position	Chr01 42824-42829
Ref /Alleles	CTCTTA/ C
MAF	C: 0.004
5' Flank	TAACACCTTATGCGATATTTGATATGATAT
3' Flank	AACTTTACTCCCACAGCCAGAGACGTCAAG

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	N\|N
2	103	Improved	N\|N
3	107	Improved	CTCTTA\|CTCTTA
4	11	Improved	CTCTTA\|CTCTTA
5	110	Improved	CTCTTA\|CTCTTA
6	123	Landrace	CTCTTA\|CTCTTA
7	131	Improved	CTCTTA\|CTCTTA
8	132	Improved	CTCTTA\|CTCTTA
9	135	Improved	CTCTTA\|CTCTTA
10	137	Improved	CTCTTA\|CTCTTA
11	138	Improved	CTCTTA\|CTCTTA
12	14	Improved	CTCTTA\|CTCTTA
13	140	Improved	CTCTTA\|CTCTTA
14	141	Improved	CTCTTA\|CTCTTA
15	144	Improved	CTCTTA\|CTCTTA
16	150	Improved	CTCTTA\|CTCTTA
17	154	Improved	CTCTTA\|CTCTTA
18	159	Landrace	N\|N
19	16	Improved	CTCTTA\|CTCTTA
20	161	Landrace	CTCTTA\|CTCTTA
21	167	Improved	CTCTTA\|CTCTTA
22	168	Improved	CTCTTA\|CTCTTA
23	170	Improved	N\|N
24	173	Improved	CTCTTA\|CTCTTA
25	175	Improved	CTCTTA\|CTCTTA
26	176	Improved	CTCTTA\|CTCTTA
27	182	Landrace	CTCTTA\|CTCTTA
28	186	Improved	N\|N
29	190	Improved	CTCTTA\|CTCTTA
30	192	Improved	CTCTTA\|CTCTTA
31	194	Improved	CTCTTA\|CTCTTA
32	195	Improved	CTCTTA\|CTCTTA
33	197	Improved	CTCTTA\|CTCTTA
34	J22	Landrace	CTCTTA\|CTCTTA
35	J26	Landrace	CTCTTA\|CTCTTA
36	J5	Landrace	CTCTTA\|CTCTTA
37	J50	Landrace	CTCTTA\|CTCTTA
38	2001	Landrace	CTCTTA\|CTCTTA
39	2005	Improved	CTCTTA\|CTCTTA
40	2008	Improved	N\|N
41	2009	Landrace	N\|N
42	201	Improved	N\|N
43	2010	Landrace	CTCTTA\|CTCTTA
44	2016	Improved	CTCTTA\|CTCTTA
45	2019	Improved	CTCTTA\|CTCTTA
46	202	Improved	CTCTTA\|CTCTTA
47	2021	Improved	CTCTTA\|CTCTTA
48	2023	Improved	CTCTTA\|CTCTTA
49	2026	Improved	N\|N
50	2029	Improved	CTCTTA\|CTCTTA
51	2030	Landrace	CTCTTA\|CTCTTA
52	2031	Landrace	CTCTTA\|CTCTTA
53	2036	Improved	CTCTTA\|CTCTTA
54	2037	Improved	CTCTTA\|CTCTTA
55	2038	Improved	N\|N
56	2039	Improved	CTCTTA\|CTCTTA
57	204	Improved	CTCTTA\|CTCTTA
58	2042	Improved	CTCTTA\|CTCTTA
59	2043	Improved	CTCTTA\|CTCTTA
60	2048	Improved	CTCTTA\|CTCTTA
61	2049	Improved	CTCTTA\|CTCTTA
62	205	Improved	CTCTTA\|CTCTTA
63	2050	Improved	CTCTTA\|CTCTTA
64	2052	Improved	N\|N
65	2054	Improved	CTCTTA\|CTCTTA
66	2056	Improved	CTCTTA\|CTCTTA
67	2059	Improved	CTCTTA\|CTCTTA
68	206	Improved	CTCTTA\|CTCTTA
69	2064	Improved	CTCTTA\|CTCTTA
70	2065	Improved	CTCTTA\|CTCTTA
71	2067	Improved	CTCTTA\|CTCTTA
72	2068	Improved	CTCTTA\|CTCTTA
73	2069	Improved	CTCTTA\|CTCTTA
74	2071	Improved	CTCTTA\|CTCTTA
75	2074	Improved	CTCTTA\|CTCTTA
76	2075	Improved	CTCTTA\|CTCTTA
77	2076	Improved	CTCTTA\|CTCTTA
78	2080	Improved	CTCTTA\|CTCTTA
79	2081	Improved	CTCTTA\|CTCTTA
80	2082	Improved	CTCTTA\|CTCTTA
81	2086	Improved	CTCTTA\|CTCTTA
82	2088	Improved	CTCTTA\|CTCTTA
83	260	Wild sorghum	N\|N
84	261	Improved	N\|N
85	262	Improved	N\|N
86	263	Improved	CTCTTA\|CTCTTA
87	286	Improved	N\|N
88	29	Improved	CTCTTA\|CTCTTA
89	3	Improved	CTCTTA\|CTCTTA
90	302546	S.propinquum	CTCTTA\|CTCTTA
91	31	Improved	CTCTTA\|CTCTTA
92	32	Improved	N\|N
93	34	Improved	N\|N
94	346	Landrace	CTCTTA\|CTCTTA
95	348	Wild sorghum	CTCTTA\|CTCTTA
96	353	Wild sorghum	N\|N
97	355	Wild sorghum	N\|N
98	357	Wild sorghum	CTCTTA\|CTCTTA
99	364	Wild sorghum	CTCTTA\|CTCTTA
100	367	Landrace	N\|N
101	s37	S.propinquum	CTCTTA\|CTCTTA
102	s38	S.propinquum	CTCTTA\|CTCTTA
103	370	Landrace	N\|N
104	377	Wild sorghum	CTCTTA\|CTCTTA
105	392	Wild sorghum	N\|N
106	394	Wild sorghum	CTCTTA\|CTCTTA
107	40	Improved	CTCTTA\|CTCTTA
108	42	Improved	N\|N
109	43	Improved	CTCTTA\|CTCTTA
110	45	Improved	CTCTTA\|CTCTTA
111	47	Improved	CTCTTA\|CTCTTA
112	48	Improved	CTCTTA\|CTCTTA
113	51	Improved	CTCTTA\|CTCTTA
114	53	Improved	CTCTTA\|CTCTTA
115	56	Improved	CTCTTA\|CTCTTA
116	61	Improved	CTCTTA\|CTCTTA
117	62	Improved	CTCTTA\|CTCTTA
118	66	Landrace	CTCTTA\|CTCTTA
119	67	Improved	CTCTTA\|CTCTTA
120	68	Improved	CTCTTA\|CTCTTA
121	70	Improved	CTCTTA\|CTCTTA
122	73	Improved	CTCTTA\|CTCTTA
123	75	Improved	CTCTTA\|CTCTTA
124	88	Improved	CTCTTA\|CTCTTA
125	89	Improved	CTCTTA\|CTCTTA
126	91	Improved	CTCTTA\|CTCTTA
127	92	Improved	CTCTTA\|CTCTTA
128	93	Improved	CTCTTA\|CTCTTA
129	94	Improved	CTCTTA\|CTCTTA
130	95	Improved	CTCTTA\|CTCTTA
131	96	Improved	CTCTTA\|CTCTTA
132	97	Improved	CTCTTA\|CTCTTA
133	s1	Improved	CTCTTA\|CTCTTA
134	s36	Wild sorghum	CTCTTA\|CTCTTA
135	s2	Landrace	CTCTTA\|CTCTTA
136	s3	Improved	CTCTTA\|CTCTTA
137	s32	Improved	CTCTTA\|CTCTTA
138	s43	Weedy	CTCTTA\|CTCTTA
139	s40	Landrace	CTCTTA\|CTCTTA
140	s41	Weedy	CTCTTA\|CTCTTA
141	s39	Landrace	CTCTTA\|CTCTTA
142	s42	Landrace	CTCTTA\|CTCTTA
143	s47	Improved	CTCTTA\|CTCTTA
144	s5	Landrace	CTCTTA\|CTCTTA
145	GW102	Landrace	CTCTTA\|CTCTTA
146	GW103	Landrace	CTCTTA\|CTCTTA
147	GW104	Landrace	CTCTTA\|CTCTTA
148	GW105	Landrace	CTCTTA\|CTCTTA
149	GW16	Landrace	CTCTTA\|CTCTTA
150	GW2	Landrace	CTCTTA\|CTCTTA
151	GW34	Landrace	CTCTTA\|CTCTTA
152	GW37	Landrace	CTCTTA\|CTCTTA
153	GW58	Landrace	CTCTTA\|CTCTTA
154	GW59	Landrace	CTCTTA\|CTCTTA
155	GW9	Landrace	CTCTTA\|CTCTTA
156	s4	Weedy	CTCTTA\|CTCTTA
157	s6	Improved	CTCTTA\|CTCTTA
158	s7	Landrace	CTCTTA\|CTCTTA
159	s8	Landrace	CTCTTA\|CTCTTA
160	s9	Landrace	CTCTTA\|CTCTTA
161	J101	Landrace	CTCTTA\|CTCTTA
162	J103	Improved	CTCTTA\|CTCTTA
163	J112	Landrace	CTCTTA\|CTCTTA
164	J113	Improved	CTCTTA\|CTCTTA
165	J129	Improved	CTCTTA\|CTCTTA
166	J130	Improved	CTCTTA\|CTCTTA
167	J136	Improved	CTCTTA\|CTCTTA
168	J152	Improved	CTCTTA\|CTCTTA
169	J2	Landrace	CTCTTA\|CTCTTA
170	J20	Landrace	CTCTTA\|CTCTTA
171	J4	Landrace	CTCTTA\|CTCTTA
172	J42	Landrace	CTCTTA\|CTCTTA
173	J44	Landrace	CTCTTA\|CTCTTA
174	J49	Landrace	N\|N
175	J52	Landrace	CTCTTA\|CTCTTA
176	J53	Landrace	CTCTTA\|CTCTTA
177	J54	Landrace	CTCTTA\|CTCTTA
178	J57	Landrace	CTCTTA\|CTCTTA
179	J59	Landrace	CTCTTA\|CTCTTA
180	J64	Landrace	CTCTTA\|CTCTTA
181	J66	Landrace	N\|N
182	J67	Landrace	N\|N
183	J69	Landrace	CTCTTA\|CTCTTA
184	J87	Landrace	CTCTTA\|CTCTTA
185	J99	Landrace	CTCTTA\|CTCTTA
186	s45	Landrace	CTCTTA\|CTCTTA
187	s11	Improved	CTCTTA\|CTCTTA
188	s10	Improved	CTCTTA\|CTCTTA
189	s46	Improved	CTCTTA\|CTCTTA
190	s12	Improved	CTCTTA\|CTCTTA
191	s13	Landrace	CTCTTA\|CTCTTA
192	MHMD	Landrace	CTCTTA\|CTCTTA
193	s14	Improved	CTCTTA\|CTCTTA
194	s15	Improved	CTCTTA\|CTCTTA
195	s34	Weedy	CTCTTA\|CTCTTA
196	s33	Wild sorghum	CTCTTA\|CTCTTA
197	s21	Wild sorghum	CTCTTA\|CTCTTA
198	s16	Wild sorghum	CTCTTA\|CTCTTA
199	s44	Improved	CTCTTA\|CTCTTA
200	s35	Landrace	CTCTTA\|CTCTTA
201	s31	Wild sorghum	CTCTTA\|CTCTTA
202	s17	Improved	CTCTTA\|CTCTTA
203	s18	Improved	CTCTTA\|CTCTTA
204	s20	Improved	CTCTTA\|CTCTTA
205	s19	Improved	CTCTTA\|CTCTTA
206	s22	Landrace	CTCTTA\|CTCTTA
207	s23	Landrace	CTCTTA\|CTCTTA
208	s24	Landrace	CTCTTA\|CTCTTA
209	s25	Landrace	CTCTTA\|CTCTTA
210	s26	Landrace	CTCTTA\|CTCTTA
211	s27	Landrace	CTCTTA\|CTCTTA
212	s28	Landrace	CTCTTA\|CTCTTA
213	s29	Landrace	CTCTTA\|CTCTTA
214	s30	Landrace	CTCTTA\|CTCTTA
215	SL25	Wild sorghum	CTCTTA\|CTCTTA
216	SL105	Wild sorghum	CTCTTA\|CTCTTA
217	SL108	Wild sorghum	CTCTTA\|CTCTTA
218	SL109	Wild sorghum	CTCTTA\|CTCTTA
219	SL12	Wild sorghum	CTCTTA\|CTCTTA
220	SL129	Wild sorghum	CTCTTA\|CTCTTA
221	SL130	Wild sorghum	CTCTTA\|CTCTTA
222	SL135	Wild sorghum	CTCTTA\|CTCTTA
223	SL136	Wild sorghum	CTCTTA\|CTCTTA
224	SL137	Wild sorghum	CTCTTA\|CTCTTA
225	SL138	Wild sorghum	N\|N
226	SL140	Wild sorghum	CTCTTA\|CTCTTA
227	SL141	Wild sorghum	CTCTTA\|CTCTTA
228	SL19	Wild sorghum	N\|N
229	SL28	Wild sorghum	CTCTTA\|CTCTTA
230	SL32	Wild sorghum	CTCTTA\|CTCTTA
231	SL35	Wild sorghum	CTCTTA\|CTCTTA
232	SL36	Wild sorghum	CTCTTA\|CTCTTA
233	SL37	Wild sorghum	CTCTTA\|CTCTTA
234	SL39	Wild sorghum	CTCTTA\|CTCTTA
235	SL41	Wild sorghum	CTCTTA\|CTCTTA
236	SL43	Wild sorghum	CTCTTA\|CTCTTA
237	SL47	Wild sorghum	CTCTTA\|CTCTTA
238	SL49	Wild sorghum	CTCTTA\|CTCTTA
239	SL51	Wild sorghum	CTCTTA\|CTCTTA
240	SL53	Wild sorghum	CTCTTA\|CTCTTA
241	SL62	Wild sorghum	CTCTTA\|CTCTTA
242	SL83	Wild sorghum	N\|N
243	SL97	Landrace	N\|N
244	s48	Improved	CTCTTA\|CTCTTA
245	Tu13	Wild sorghum	CTCTTA\|CTCTTA
246	Tu14	Wild sorghum	CTCTTA\|CTCTTA
247	Tu30	Wild sorghum	CTCTTA\|CTCTTA
248	Tu5	Wild sorghum	CTCTTA\|CTCTTA
249	WSC5	Landrace	CTCTTA\|CTCTTA
250	WSC15	Landrace	CTCTTA\|CTCTTA
251	WSC19	Landrace	CTCTTA\|CTCTTA
252	WSC30	Landrace	CTCTTA\|CTCTTA
253	WSC52	Landrace	CTCTTA\|CTCTTA
254	WSC6	Landrace	CTCTTA\|CTCTTA
255	WSC61	Landrace	CTCTTA\|CTCTTA
256	WSC71	Improved	CTCTTA\|CTCTTA
257	WSC72	Landrace	CTCTTA\|CTCTTA
258	WSC79	Landrace	N\|N
259	WSC94	Landrace	CTCTTA\|CTCTTA
260	WSC99	Landrace	CTCTTA\|CTCTTA
261	WSC100	Landrace	CTCTTA\|CTCTTA
262	WSC104	Landrace	CTCTTA\|CTCTTA
263	WSC105	Landrace	CTCTTA\|CTCTTA
264	WSC12	Landrace	CTCTTA\|CTCTTA
265	WSC13	Landrace	CTCTTA\|CTCTTA
266	WSC16	Landrace	CTCTTA\|CTCTTA
267	WSC17	Landrace	CTCTTA\|CTCTTA
268	WSC18	Landrace	CTCTTA\|CTCTTA
269	WSC20	Landrace	CTCTTA\|CTCTTA
270	WSC24	Landrace	CTCTTA\|CTCTTA
271	WSC25	Landrace	CTCTTA\|CTCTTA
272	WSC29	Landrace	CTCTTA\|CTCTTA
273	WSC31	Landrace	CTCTTA\|CTCTTA
274	WSC32	Landrace	CTCTTA\|CTCTTA
275	WSC34	Landrace	CTCTTA\|CTCTTA
276	WSC38	Landrace	C\|C
277	WSC39	Improved	N\|N
278	WSC40	Landrace	N\|N
279	WSC54	Landrace	CTCTTA\|CTCTTA
280	WSC56	Landrace	CTCTTA\|CTCTTA
281	WSC59	Landrace	CTCTTA\|CTCTTA
282	WSC68	Landrace	N\|N
283	WSC70	Landrace	CTCTTA\|CTCTTA
284	WSC73	Landrace	CTCTTA\|CTCTTA
285	WSC81	Landrace	CTCTTA\|CTCTTA
286	WSC85	Improved	CTCTTA\|CTCTTA
287	WSC91	Landrace	CTCTTA\|CTCTTA
288	WSC93	Landrace	CTCTTA\|CTCTTA
289	WSC98	Landrace	CTCTTA\|CTCTTA

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825652	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.2	mRNA			Sobic.001G000400.2.p
sbi33825652	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.5	mRNA			Sobic.001G000400.5.p
sbi33825652	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825652	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825652	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825652	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.6	mRNA			Sobic.001G000400.6.p

Genome Browser