sorgsd

Variation ID : sbi33825662

Variation Detail

Variation ID	sbi33825662
Type	INDEL
Position	Chr01 43370-43374
Ref /Alleles	CTAGG/ C
MAF	C: 0.011
5' Flank	TAGTATGAGCTTTTCCATACCAAATATATC
3' Flank	AGGATTTTCATACACGTGCTAGGATTGGTG

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	CTAGG\|CTAGG
2	103	Improved	CTAGG\|CTAGG
3	107	Improved	CTAGG\|CTAGG
4	11	Improved	CTAGG\|CTAGG
5	110	Improved	CTAGG\|CTAGG
6	123	Landrace	CTAGG\|CTAGG
7	131	Improved	CTAGG\|CTAGG
8	132	Improved	CTAGG\|CTAGG
9	135	Improved	CTAGG\|CTAGG
10	137	Improved	CTAGG\|CTAGG
11	138	Improved	CTAGG\|CTAGG
12	14	Improved	CTAGG\|CTAGG
13	140	Improved	CTAGG\|CTAGG
14	141	Improved	CTAGG\|CTAGG
15	144	Improved	CTAGG\|CTAGG
16	150	Improved	CTAGG\|CTAGG
17	154	Improved	CTAGG\|CTAGG
18	159	Landrace	CTAGG\|CTAGG
19	16	Improved	CTAGG\|CTAGG
20	161	Landrace	CTAGG\|CTAGG
21	167	Improved	CTAGG\|CTAGG
22	168	Improved	CTAGG\|CTAGG
23	170	Improved	CTAGG\|CTAGG
24	173	Improved	CTAGG\|CTAGG
25	175	Improved	CTAGG\|CTAGG
26	176	Improved	CTAGG\|CTAGG
27	182	Landrace	CTAGG\|CTAGG
28	186	Improved	CTAGG\|CTAGG
29	190	Improved	CTAGG\|CTAGG
30	192	Improved	CTAGG\|CTAGG
31	194	Improved	N\|N
32	195	Improved	CTAGG\|CTAGG
33	197	Improved	CTAGG\|CTAGG
34	J22	Landrace	CTAGG\|CTAGG
35	J26	Landrace	CTAGG\|CTAGG
36	J5	Landrace	CTAGG\|CTAGG
37	J50	Landrace	CTAGG\|CTAGG
38	2001	Landrace	CTAGG\|CTAGG
39	2005	Improved	CTAGG\|CTAGG
40	2008	Improved	CTAGG\|CTAGG
41	2009	Landrace	N\|N
42	201	Improved	CTAGG\|CTAGG
43	2010	Landrace	CTAGG\|CTAGG
44	2016	Improved	CTAGG\|CTAGG
45	2019	Improved	CTAGG\|CTAGG
46	202	Improved	CTAGG\|CTAGG
47	2021	Improved	N\|N
48	2023	Improved	CTAGG\|CTAGG
49	2026	Improved	CTAGG\|CTAGG
50	2029	Improved	CTAGG\|CTAGG
51	2030	Landrace	CTAGG\|CTAGG
52	2031	Landrace	CTAGG\|CTAGG
53	2036	Improved	CTAGG\|CTAGG
54	2037	Improved	CTAGG\|CTAGG
55	2038	Improved	CTAGG\|CTAGG
56	2039	Improved	CTAGG\|CTAGG
57	204	Improved	CTAGG\|CTAGG
58	2042	Improved	CTAGG\|CTAGG
59	2043	Improved	CTAGG\|CTAGG
60	2048	Improved	CTAGG\|CTAGG
61	2049	Improved	CTAGG\|CTAGG
62	205	Improved	CTAGG\|CTAGG
63	2050	Improved	CTAGG\|CTAGG
64	2052	Improved	CTAGG\|CTAGG
65	2054	Improved	CTAGG\|CTAGG
66	2056	Improved	CTAGG\|CTAGG
67	2059	Improved	CTAGG\|CTAGG
68	206	Improved	CTAGG\|CTAGG
69	2064	Improved	CTAGG\|CTAGG
70	2065	Improved	CTAGG\|CTAGG
71	2067	Improved	CTAGG\|CTAGG
72	2068	Improved	N\|N
73	2069	Improved	CTAGG\|CTAGG
74	2071	Improved	CTAGG\|CTAGG
75	2074	Improved	N\|N
76	2075	Improved	CTAGG\|CTAGG
77	2076	Improved	CTAGG\|CTAGG
78	2080	Improved	CTAGG\|CTAGG
79	2081	Improved	CTAGG\|CTAGG
80	2082	Improved	CTAGG\|CTAGG
81	2086	Improved	CTAGG\|CTAGG
82	2088	Improved	CTAGG\|CTAGG
83	260	Wild sorghum	CTAGG\|CTAGG
84	261	Improved	CTAGG\|CTAGG
85	262	Improved	CTAGG\|CTAGG
86	263	Improved	CTAGG\|CTAGG
87	286	Improved	CTAGG\|CTAGG
88	29	Improved	CTAGG\|CTAGG
89	3	Improved	CTAGG\|CTAGG
90	302546	S.propinquum	N\|N
91	31	Improved	CTAGG\|CTAGG
92	32	Improved	CTAGG\|CTAGG
93	34	Improved	CTAGG\|CTAGG
94	346	Landrace	CTAGG\|CTAGG
95	348	Wild sorghum	CTAGG\|CTAGG
96	353	Wild sorghum	CTAGG\|CTAGG
97	355	Wild sorghum	CTAGG\|CTAGG
98	357	Wild sorghum	CTAGG\|CTAGG
99	364	Wild sorghum	CTAGG\|CTAGG
100	367	Landrace	CTAGG\|CTAGG
101	s37	S.propinquum	C\|C
102	s38	S.propinquum	C\|C
103	370	Landrace	N\|N
104	377	Wild sorghum	CTAGG\|CTAGG
105	392	Wild sorghum	CTAGG\|CTAGG
106	394	Wild sorghum	CTAGG\|CTAGG
107	40	Improved	CTAGG\|CTAGG
108	42	Improved	N\|N
109	43	Improved	CTAGG\|CTAGG
110	45	Improved	CTAGG\|CTAGG
111	47	Improved	CTAGG\|CTAGG
112	48	Improved	CTAGG\|CTAGG
113	51	Improved	CTAGG\|CTAGG
114	53	Improved	CTAGG\|CTAGG
115	56	Improved	CTAGG\|CTAGG
116	61	Improved	CTAGG\|CTAGG
117	62	Improved	CTAGG\|CTAGG
118	66	Landrace	CTAGG\|CTAGG
119	67	Improved	CTAGG\|CTAGG
120	68	Improved	CTAGG\|CTAGG
121	70	Improved	CTAGG\|CTAGG
122	73	Improved	CTAGG\|CTAGG
123	75	Improved	CTAGG\|CTAGG
124	88	Improved	CTAGG\|CTAGG
125	89	Improved	CTAGG\|CTAGG
126	91	Improved	CTAGG\|CTAGG
127	92	Improved	N\|N
128	93	Improved	CTAGG\|CTAGG
129	94	Improved	CTAGG\|CTAGG
130	95	Improved	N\|N
131	96	Improved	CTAGG\|CTAGG
132	97	Improved	CTAGG\|CTAGG
133	s1	Improved	CTAGG\|CTAGG
134	s36	Wild sorghum	CTAGG\|CTAGG
135	s2	Landrace	CTAGG\|CTAGG
136	s3	Improved	CTAGG\|CTAGG
137	s32	Improved	CTAGG\|CTAGG
138	s43	Weedy	CTAGG\|CTAGG
139	s40	Landrace	CTAGG\|CTAGG
140	s41	Weedy	CTAGG\|CTAGG
141	s39	Landrace	CTAGG\|CTAGG
142	s42	Landrace	CTAGG\|CTAGG
143	s47	Improved	CTAGG\|CTAGG
144	s5	Landrace	CTAGG\|CTAGG
145	GW102	Landrace	CTAGG\|CTAGG
146	GW103	Landrace	CTAGG\|CTAGG
147	GW104	Landrace	CTAGG\|CTAGG
148	GW105	Landrace	CTAGG\|CTAGG
149	GW16	Landrace	CTAGG\|CTAGG
150	GW2	Landrace	CTAGG\|CTAGG
151	GW34	Landrace	CTAGG\|CTAGG
152	GW37	Landrace	CTAGG\|CTAGG
153	GW58	Landrace	CTAGG\|CTAGG
154	GW59	Landrace	CTAGG\|CTAGG
155	GW9	Landrace	CTAGG\|CTAGG
156	s4	Weedy	CTAGG\|CTAGG
157	s6	Improved	CTAGG\|CTAGG
158	s7	Landrace	CTAGG\|CTAGG
159	s8	Landrace	CTAGG\|CTAGG
160	s9	Landrace	CTAGG\|CTAGG
161	J101	Landrace	N\|N
162	J103	Improved	CTAGG\|CTAGG
163	J112	Landrace	CTAGG\|CTAGG
164	J113	Improved	CTAGG\|CTAGG
165	J129	Improved	CTAGG\|CTAGG
166	J130	Improved	CTAGG\|CTAGG
167	J136	Improved	CTAGG\|CTAGG
168	J152	Improved	CTAGG\|CTAGG
169	J2	Landrace	CTAGG\|CTAGG
170	J20	Landrace	CTAGG\|CTAGG
171	J4	Landrace	CTAGG\|CTAGG
172	J42	Landrace	CTAGG\|CTAGG
173	J44	Landrace	CTAGG\|CTAGG
174	J49	Landrace	CTAGG\|CTAGG
175	J52	Landrace	CTAGG\|CTAGG
176	J53	Landrace	CTAGG\|CTAGG
177	J54	Landrace	CTAGG\|CTAGG
178	J57	Landrace	CTAGG\|CTAGG
179	J59	Landrace	CTAGG\|CTAGG
180	J64	Landrace	CTAGG\|CTAGG
181	J66	Landrace	CTAGG\|CTAGG
182	J67	Landrace	CTAGG\|CTAGG
183	J69	Landrace	CTAGG\|CTAGG
184	J87	Landrace	CTAGG\|CTAGG
185	J99	Landrace	CTAGG\|CTAGG
186	s45	Landrace	CTAGG\|CTAGG
187	s11	Improved	CTAGG\|CTAGG
188	s10	Improved	CTAGG\|CTAGG
189	s46	Improved	CTAGG\|CTAGG
190	s12	Improved	CTAGG\|CTAGG
191	s13	Landrace	CTAGG\|CTAGG
192	MHMD	Landrace	CTAGG\|CTAGG
193	s14	Improved	CTAGG\|CTAGG
194	s15	Improved	CTAGG\|CTAGG
195	s34	Weedy	CTAGG\|CTAGG
196	s33	Wild sorghum	CTAGG\|CTAGG
197	s21	Wild sorghum	CTAGG\|CTAGG
198	s16	Wild sorghum	CTAGG\|CTAGG
199	s44	Improved	CTAGG\|CTAGG
200	s35	Landrace	CTAGG\|CTAGG
201	s31	Wild sorghum	CTAGG\|CTAGG
202	s17	Improved	CTAGG\|CTAGG
203	s18	Improved	CTAGG\|CTAGG
204	s20	Improved	CTAGG\|CTAGG
205	s19	Improved	CTAGG\|CTAGG
206	s22	Landrace	CTAGG\|CTAGG
207	s23	Landrace	CTAGG\|CTAGG
208	s24	Landrace	CTAGG\|CTAGG
209	s25	Landrace	CTAGG\|CTAGG
210	s26	Landrace	CTAGG\|CTAGG
211	s27	Landrace	CTAGG\|CTAGG
212	s28	Landrace	CTAGG\|CTAGG
213	s29	Landrace	CTAGG\|CTAGG
214	s30	Landrace	CTAGG\|CTAGG
215	SL25	Wild sorghum	CTAGG\|CTAGG
216	SL105	Wild sorghum	CTAGG\|CTAGG
217	SL108	Wild sorghum	CTAGG\|CTAGG
218	SL109	Wild sorghum	CTAGG\|CTAGG
219	SL12	Wild sorghum	CTAGG\|CTAGG
220	SL129	Wild sorghum	CTAGG\|CTAGG
221	SL130	Wild sorghum	CTAGG\|CTAGG
222	SL135	Wild sorghum	CTAGG\|CTAGG
223	SL136	Wild sorghum	CTAGG\|CTAGG
224	SL137	Wild sorghum	CTAGG\|CTAGG
225	SL138	Wild sorghum	CTAGG\|CTAGG
226	SL140	Wild sorghum	CTAGG\|CTAGG
227	SL141	Wild sorghum	CTAGG\|CTAGG
228	SL19	Wild sorghum	CTAGG\|CTAGG
229	SL28	Wild sorghum	CTAGG\|CTAGG
230	SL32	Wild sorghum	C\|C
231	SL35	Wild sorghum	CTAGG\|CTAGG
232	SL36	Wild sorghum	CTAGG\|CTAGG
233	SL37	Wild sorghum	CTAGG\|CTAGG
234	SL39	Wild sorghum	N\|N
235	SL41	Wild sorghum	CTAGG\|CTAGG
236	SL43	Wild sorghum	CTAGG\|CTAGG
237	SL47	Wild sorghum	CTAGG\|CTAGG
238	SL49	Wild sorghum	CTAGG\|CTAGG
239	SL51	Wild sorghum	CTAGG\|CTAGG
240	SL53	Wild sorghum	CTAGG\|CTAGG
241	SL62	Wild sorghum	CTAGG\|CTAGG
242	SL83	Wild sorghum	N\|N
243	SL97	Landrace	CTAGG\|CTAGG
244	s48	Improved	CTAGG\|CTAGG
245	Tu13	Wild sorghum	CTAGG\|CTAGG
246	Tu14	Wild sorghum	N\|N
247	Tu30	Wild sorghum	CTAGG\|CTAGG
248	Tu5	Wild sorghum	CTAGG\|CTAGG
249	WSC5	Landrace	CTAGG\|CTAGG
250	WSC15	Landrace	CTAGG\|CTAGG
251	WSC19	Landrace	CTAGG\|CTAGG
252	WSC30	Landrace	CTAGG\|CTAGG
253	WSC52	Landrace	CTAGG\|CTAGG
254	WSC6	Landrace	CTAGG\|CTAGG
255	WSC61	Landrace	CTAGG\|CTAGG
256	WSC71	Improved	CTAGG\|CTAGG
257	WSC72	Landrace	CTAGG\|CTAGG
258	WSC79	Landrace	CTAGG\|CTAGG
259	WSC94	Landrace	CTAGG\|CTAGG
260	WSC99	Landrace	CTAGG\|CTAGG
261	WSC100	Landrace	CTAGG\|CTAGG
262	WSC104	Landrace	CTAGG\|CTAGG
263	WSC105	Landrace	CTAGG\|CTAGG
264	WSC12	Landrace	CTAGG\|CTAGG
265	WSC13	Landrace	CTAGG\|CTAGG
266	WSC16	Landrace	CTAGG\|CTAGG
267	WSC17	Landrace	CTAGG\|CTAGG
268	WSC18	Landrace	CTAGG\|CTAGG
269	WSC20	Landrace	CTAGG\|CTAGG
270	WSC24	Landrace	CTAGG\|CTAGG
271	WSC25	Landrace	CTAGG\|CTAGG
272	WSC29	Landrace	CTAGG\|CTAGG
273	WSC31	Landrace	CTAGG\|CTAGG
274	WSC32	Landrace	CTAGG\|CTAGG
275	WSC34	Landrace	CTAGG\|CTAGG
276	WSC38	Landrace	CTAGG\|CTAGG
277	WSC39	Improved	CTAGG\|CTAGG
278	WSC40	Landrace	CTAGG\|CTAGG
279	WSC54	Landrace	CTAGG\|CTAGG
280	WSC56	Landrace	CTAGG\|CTAGG
281	WSC59	Landrace	CTAGG\|CTAGG
282	WSC68	Landrace	CTAGG\|CTAGG
283	WSC70	Landrace	CTAGG\|CTAGG
284	WSC73	Landrace	CTAGG\|CTAGG
285	WSC81	Landrace	CTAGG\|CTAGG
286	WSC85	Improved	CTAGG\|CTAGG
287	WSC91	Landrace	CTAGG\|CTAGG
288	WSC93	Landrace	CTAGG\|CTAGG
289	WSC98	Landrace	CTAGG\|CTAGG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825662	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825662	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825662	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p

Genome Browser