sorgsd

Variation ID : sbi33825678

Variation Detail

Variation ID	sbi33825678
Type	INDEL
Position	Chr01 45687-45688
Ref /Alleles	TG/ T
MAF	T: 0.131
5' Flank	CTCTCTTCCCAAGCATGAAAACATCATTCA
3' Flank	GAAACCACTACATATATATTTTTTGGATTC

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	T\|T
2	103	Improved	T\|T
3	107	Improved	N\|N
4	11	Improved	TG\|TG
5	110	Improved	TG\|TG
6	123	Landrace	N\|N
7	131	Improved	TG\|TG
8	132	Improved	TG\|TG
9	135	Improved	TG\|TG
10	137	Improved	TG\|TG
11	138	Improved	TG\|TG
12	14	Improved	TG\|TG
13	140	Improved	TG\|TG
14	141	Improved	N\|N
15	144	Improved	T\|T
16	150	Improved	T\|T
17	154	Improved	TG\|TG
18	159	Landrace	N\|N
19	16	Improved	TG\|TG
20	161	Landrace	TG\|TG
21	167	Improved	TG\|TG
22	168	Improved	TG\|TG
23	170	Improved	N\|N
24	173	Improved	TG\|TG
25	175	Improved	T\|T
26	176	Improved	TG\|TG
27	182	Landrace	TG\|TG
28	186	Improved	TG\|TG
29	190	Improved	TG\|TG
30	192	Improved	TG\|TG
31	194	Improved	N\|N
32	195	Improved	TG\|TG
33	197	Improved	TG\|TG
34	J22	Landrace	TG\|TG
35	J26	Landrace	TG\|TG
36	J5	Landrace	TG\|TG
37	J50	Landrace	TG\|TG
38	2001	Landrace	TG\|TG
39	2005	Improved	TG\|TG
40	2008	Improved	N\|N
41	2009	Landrace	N\|N
42	201	Improved	T\|T
43	2010	Landrace	T\|T
44	2016	Improved	TG\|TG
45	2019	Improved	TG\|TG
46	202	Improved	TG\|TG
47	2021	Improved	N\|N
48	2023	Improved	TG\|TG
49	2026	Improved	TG\|TG
50	2029	Improved	TG\|TG
51	2030	Landrace	T\|T
52	2031	Landrace	TG\|TG
53	2036	Improved	TG\|TG
54	2037	Improved	T\|T
55	2038	Improved	T\|T
56	2039	Improved	TG\|TG
57	204	Improved	TG\|TG
58	2042	Improved	N\|N
59	2043	Improved	TG\|TG
60	2048	Improved	N\|N
61	2049	Improved	TG\|TG
62	205	Improved	TG\|TG
63	2050	Improved	TG\|TG
64	2052	Improved	TG\|TG
65	2054	Improved	TG\|TG
66	2056	Improved	TG\|TG
67	2059	Improved	TG\|TG
68	206	Improved	TG\|TG
69	2064	Improved	TG\|TG
70	2065	Improved	TG\|TG
71	2067	Improved	TG\|TG
72	2068	Improved	TG\|TG
73	2069	Improved	TG\|TG
74	2071	Improved	T\|T
75	2074	Improved	TG\|TG
76	2075	Improved	TG\|TG
77	2076	Improved	TG\|TG
78	2080	Improved	TG\|TG
79	2081	Improved	TG\|TG
80	2082	Improved	TG\|TG
81	2086	Improved	TG\|TG
82	2088	Improved	TG\|TG
83	260	Wild sorghum	N\|N
84	261	Improved	TG\|TG
85	262	Improved	TG\|TG
86	263	Improved	TG\|TG
87	286	Improved	N\|N
88	29	Improved	TG\|TG
89	3	Improved	TG\|TG
90	302546	S.propinquum	TG\|TG
91	31	Improved	TG\|T
92	32	Improved	TG\|TG
93	34	Improved	TG\|TG
94	346	Landrace	TG\|TG
95	348	Wild sorghum	TG\|TG
96	353	Wild sorghum	TG\|TG
97	355	Wild sorghum	TG\|TG
98	357	Wild sorghum	TG\|TG
99	364	Wild sorghum	TG\|TG
100	367	Landrace	TG\|TG
101	s37	S.propinquum	TG\|TG
102	s38	S.propinquum	TG\|TG
103	370	Landrace	N\|N
104	377	Wild sorghum	TG\|TG
105	392	Wild sorghum	TG\|TG
106	394	Wild sorghum	N\|N
107	40	Improved	TG\|TG
108	42	Improved	N\|N
109	43	Improved	TG\|TG
110	45	Improved	T\|T
111	47	Improved	TG\|TG
112	48	Improved	TG\|TG
113	51	Improved	T\|T
114	53	Improved	T\|T
115	56	Improved	TG\|TG
116	61	Improved	TG\|TG
117	62	Improved	TG\|TG
118	66	Landrace	N\|N
119	67	Improved	TG\|TG
120	68	Improved	TG\|TG
121	70	Improved	TG\|TG
122	73	Improved	TG\|TG
123	75	Improved	TG\|TG
124	88	Improved	T\|T
125	89	Improved	T\|T
126	91	Improved	TG\|TG
127	92	Improved	T\|T
128	93	Improved	TG\|TG
129	94	Improved	T\|T
130	95	Improved	T\|T
131	96	Improved	T\|T
132	97	Improved	T\|T
133	s1	Improved	TG\|TG
134	s36	Wild sorghum	TG\|TG
135	s2	Landrace	TG\|TG
136	s3	Improved	TG\|TG
137	s32	Improved	TG\|TG
138	s43	Weedy	TG\|TG
139	s40	Landrace	TG\|TG
140	s41	Weedy	TG\|TG
141	s39	Landrace	TG\|TG
142	s42	Landrace	T\|T
143	s47	Improved	TG\|TG
144	s5	Landrace	T\|T
145	GW102	Landrace	TG\|TG
146	GW103	Landrace	TG\|TG
147	GW104	Landrace	TG\|TG
148	GW105	Landrace	TG\|TG
149	GW16	Landrace	TG\|TG
150	GW2	Landrace	TG\|TG
151	GW34	Landrace	TG\|TG
152	GW37	Landrace	TG\|TG
153	GW58	Landrace	TG\|TG
154	GW59	Landrace	TG\|TG
155	GW9	Landrace	TG\|TG
156	s4	Weedy	TG\|TG
157	s6	Improved	TG\|TG
158	s7	Landrace	TG\|TG
159	s8	Landrace	TG\|TG
160	s9	Landrace	TG\|TG
161	J101	Landrace	TG\|TG
162	J103	Improved	TG\|TG
163	J112	Landrace	TG\|TG
164	J113	Improved	N\|N
165	J129	Improved	TG\|TG
166	J130	Improved	TG\|TG
167	J136	Improved	TG\|TG
168	J152	Improved	TG\|TG
169	J2	Landrace	TG\|TG
170	J20	Landrace	TG\|TG
171	J4	Landrace	TG\|TG
172	J42	Landrace	TG\|TG
173	J44	Landrace	TG\|TG
174	J49	Landrace	TG\|TG
175	J52	Landrace	TG\|TG
176	J53	Landrace	TG\|TG
177	J54	Landrace	TG\|TG
178	J57	Landrace	TG\|TG
179	J59	Landrace	TG\|TG
180	J64	Landrace	TG\|TG
181	J66	Landrace	TG\|TG
182	J67	Landrace	N\|N
183	J69	Landrace	TG\|TG
184	J87	Landrace	TG\|TG
185	J99	Landrace	TG\|TG
186	s45	Landrace	TG\|TG
187	s11	Improved	TG\|TG
188	s10	Improved	TG\|TG
189	s46	Improved	TG\|TG
190	s12	Improved	TG\|TG
191	s13	Landrace	TG\|TG
192	MHMD	Landrace	T\|T
193	s14	Improved	TG\|TG
194	s15	Improved	TG\|TG
195	s34	Weedy	TG\|TG
196	s33	Wild sorghum	TG\|TG
197	s21	Wild sorghum	TG\|TG
198	s16	Wild sorghum	TG\|TG
199	s44	Improved	TG\|TG
200	s35	Landrace	T\|T
201	s31	Wild sorghum	TG\|TG
202	s17	Improved	TG\|TG
203	s18	Improved	TG\|TG
204	s20	Improved	TG\|TG
205	s19	Improved	TG\|TG
206	s22	Landrace	T\|T
207	s23	Landrace	T\|T
208	s24	Landrace	TG\|TG
209	s25	Landrace	TG\|TG
210	s26	Landrace	T\|T
211	s27	Landrace	T\|T
212	s28	Landrace	TG\|TG
213	s29	Landrace	TG\|TG
214	s30	Landrace	TG\|TG
215	SL25	Wild sorghum	TG\|TG
216	SL105	Wild sorghum	TG\|TG
217	SL108	Wild sorghum	TG\|TG
218	SL109	Wild sorghum	TG\|TG
219	SL12	Wild sorghum	TG\|TG
220	SL129	Wild sorghum	TG\|TG
221	SL130	Wild sorghum	TG\|TG
222	SL135	Wild sorghum	TG\|TG
223	SL136	Wild sorghum	TG\|TG
224	SL137	Wild sorghum	TG\|TG
225	SL138	Wild sorghum	TG\|TG
226	SL140	Wild sorghum	TG\|TG
227	SL141	Wild sorghum	TG\|TG
228	SL19	Wild sorghum	N\|N
229	SL28	Wild sorghum	TG\|TG
230	SL32	Wild sorghum	TG\|TG
231	SL35	Wild sorghum	TG\|TG
232	SL36	Wild sorghum	TG\|TG
233	SL37	Wild sorghum	TG\|TG
234	SL39	Wild sorghum	TG\|TG
235	SL41	Wild sorghum	TG\|TG
236	SL43	Wild sorghum	TG\|TG
237	SL47	Wild sorghum	N\|N
238	SL49	Wild sorghum	TG\|TG
239	SL51	Wild sorghum	N\|N
240	SL53	Wild sorghum	TG\|TG
241	SL62	Wild sorghum	TG\|TG
242	SL83	Wild sorghum	TG\|TG
243	SL97	Landrace	TG\|TG
244	s48	Improved	TG\|TG
245	Tu13	Wild sorghum	TG\|TG
246	Tu14	Wild sorghum	TG\|TG
247	Tu30	Wild sorghum	TG\|TG
248	Tu5	Wild sorghum	TG\|TG
249	WSC5	Landrace	TG\|TG
250	WSC15	Landrace	TG\|TG
251	WSC19	Landrace	TG\|TG
252	WSC30	Landrace	N\|N
253	WSC52	Landrace	N\|N
254	WSC6	Landrace	TG\|TG
255	WSC61	Landrace	TG\|TG
256	WSC71	Improved	TG\|TG
257	WSC72	Landrace	TG\|TG
258	WSC79	Landrace	T\|T
259	WSC94	Landrace	TG\|TG
260	WSC99	Landrace	T\|T
261	WSC100	Landrace	TG\|TG
262	WSC104	Landrace	TG\|TG
263	WSC105	Landrace	TG\|TG
264	WSC12	Landrace	TG\|TG
265	WSC13	Landrace	TG\|TG
266	WSC16	Landrace	TG\|TG
267	WSC17	Landrace	TG\|TG
268	WSC18	Landrace	TG\|TG
269	WSC20	Landrace	TG\|TG
270	WSC24	Landrace	N\|N
271	WSC25	Landrace	TG\|TG
272	WSC29	Landrace	TG\|TG
273	WSC31	Landrace	TG\|TG
274	WSC32	Landrace	TG\|TG
275	WSC34	Landrace	TG\|TG
276	WSC38	Landrace	N\|N
277	WSC39	Improved	TG\|TG
278	WSC40	Landrace	N\|N
279	WSC54	Landrace	TG\|TG
280	WSC56	Landrace	TG\|T
281	WSC59	Landrace	TG\|TG
282	WSC68	Landrace	TG\|TG
283	WSC70	Landrace	TG\|TG
284	WSC73	Landrace	TG\|TG
285	WSC81	Landrace	T\|T
286	WSC85	Improved	N\|N
287	WSC91	Landrace	T\|T
288	WSC93	Landrace	N\|N
289	WSC98	Landrace	TG\|TG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825678	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825678	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825678	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p

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