sorgsd

Variation ID : sbi33825681

Variation Detail

Variation ID	sbi33825681
Type	INDEL
Position	Chr01 45821-45823
Ref /Alleles	ACT/ A or ACTCT
MAF	A: 0.198
5' Flank	GAGCAAATATAGTGCATACCTAGCTAGTCT
3' Flank	CTCTCTCTCATGGTGAAGCCCTAGATCCAA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	A\|A
2	103	Improved	A\|A
3	107	Improved	ACT\|ACT
4	11	Improved	ACT\|ACT
5	110	Improved	ACT\|ACT
6	123	Landrace	ACT\|ACT
7	131	Improved	ACT\|ACT
8	132	Improved	A\|A
9	135	Improved	ACT\|ACT
10	137	Improved	ACT\|ACT
11	138	Improved	ACT\|ACT
12	14	Improved	ACT\|ACT
13	140	Improved	ACT\|ACT
14	141	Improved	A\|A
15	144	Improved	A\|A
16	150	Improved	A\|A
17	154	Improved	A\|A
18	159	Landrace	ACT\|ACT
19	16	Improved	ACT\|ACT
20	161	Landrace	ACT\|ACT
21	167	Improved	ACT\|ACT
22	168	Improved	ACT\|ACT
23	170	Improved	ACT\|ACT
24	173	Improved	A\|A
25	175	Improved	A\|A
26	176	Improved	ACT\|ACT
27	182	Landrace	ACT\|ACT
28	186	Improved	ACT\|ACT
29	190	Improved	ACT\|ACT
30	192	Improved	ACT\|ACT
31	194	Improved	ACT\|ACT
32	195	Improved	ACT\|ACT
33	197	Improved	ACT\|ACT
34	J22	Landrace	ACT\|ACT
35	J26	Landrace	ACT\|ACT
36	J5	Landrace	ACT\|ACT
37	J50	Landrace	ACT\|ACT
38	2001	Landrace	ACT\|ACT
39	2005	Improved	ACT\|ACT
40	2008	Improved	ACT\|ACT
41	2009	Landrace	N\|N
42	201	Improved	A\|A
43	2010	Landrace	A\|A
44	2016	Improved	ACT\|ACT
45	2019	Improved	ACT\|ACT
46	202	Improved	ACT\|ACT
47	2021	Improved	ACT\|ACT
48	2023	Improved	ACT\|ACT
49	2026	Improved	ACT\|ACT
50	2029	Improved	ACT\|ACT
51	2030	Landrace	N\|N
52	2031	Landrace	ACT\|ACT
53	2036	Improved	ACT\|ACT
54	2037	Improved	A\|A
55	2038	Improved	A\|A
56	2039	Improved	ACT\|ACT
57	204	Improved	ACT\|ACT
58	2042	Improved	ACT\|ACT
59	2043	Improved	ACT\|ACT
60	2048	Improved	ACT\|ACT
61	2049	Improved	ACT\|ACT
62	205	Improved	ACT\|ACT
63	2050	Improved	N\|N
64	2052	Improved	ACT\|ACT
65	2054	Improved	ACT\|ACT
66	2056	Improved	ACT\|ACT
67	2059	Improved	ACT\|ACT
68	206	Improved	ACT\|ACT
69	2064	Improved	ACT\|ACT
70	2065	Improved	ACT\|ACT
71	2067	Improved	ACT\|ACT
72	2068	Improved	ACT\|ACT
73	2069	Improved	ACT\|ACT
74	2071	Improved	A\|A
75	2074	Improved	ACT\|ACT
76	2075	Improved	ACT\|ACT
77	2076	Improved	ACT\|ACT
78	2080	Improved	ACT\|ACT
79	2081	Improved	ACT\|ACT
80	2082	Improved	ACT\|ACT
81	2086	Improved	ACT\|ACT
82	2088	Improved	ACT\|ACT
83	260	Wild sorghum	N\|N
84	261	Improved	ACT\|ACT
85	262	Improved	ACT\|ACT
86	263	Improved	ACT\|ACT
87	286	Improved	ACT\|ACT
88	29	Improved	A\|A
89	3	Improved	ACT\|ACT
90	302546	S.propinquum	A\|A
91	31	Improved	ACT\|A
92	32	Improved	ACT\|ACT
93	34	Improved	A\|A
94	346	Landrace	ACT\|ACT
95	348	Wild sorghum	ACT\|ACT
96	353	Wild sorghum	ACT\|ACT
97	355	Wild sorghum	ACT\|ACT
98	357	Wild sorghum	ACT\|ACT
99	364	Wild sorghum	A\|A
100	367	Landrace	ACT\|ACT
101	s37	S.propinquum	A\|A
102	s38	S.propinquum	A\|A
103	370	Landrace	ACT\|ACT
104	377	Wild sorghum	ACTCT\|ACTCT
105	392	Wild sorghum	ACT\|ACT
106	394	Wild sorghum	ACT\|ACT
107	40	Improved	ACT\|ACT
108	42	Improved	A\|A
109	43	Improved	ACT\|ACT
110	45	Improved	N\|N
111	47	Improved	ACT\|ACT
112	48	Improved	ACT\|ACT
113	51	Improved	A\|A
114	53	Improved	A\|A
115	56	Improved	ACT\|ACT
116	61	Improved	ACT\|ACT
117	62	Improved	ACT\|ACT
118	66	Landrace	N\|N
119	67	Improved	ACT\|ACT
120	68	Improved	ACT\|ACT
121	70	Improved	ACT\|ACT
122	73	Improved	ACT\|ACT
123	75	Improved	ACT\|ACT
124	88	Improved	A\|A
125	89	Improved	A\|A
126	91	Improved	ACT\|ACT
127	92	Improved	A\|A
128	93	Improved	ACT\|ACT
129	94	Improved	A\|A
130	95	Improved	A\|A
131	96	Improved	A\|A
132	97	Improved	A\|A
133	s1	Improved	ACT\|ACT
134	s36	Wild sorghum	A\|A
135	s2	Landrace	ACT\|ACT
136	s3	Improved	ACT\|ACT
137	s32	Improved	ACT\|ACT
138	s43	Weedy	ACT\|ACT
139	s40	Landrace	ACT\|ACT
140	s41	Weedy	ACT\|ACT
141	s39	Landrace	ACT\|ACT
142	s42	Landrace	A\|A
143	s47	Improved	ACT\|ACT
144	s5	Landrace	ACT\|A
145	GW102	Landrace	ACT\|ACT
146	GW103	Landrace	ACT\|ACT
147	GW104	Landrace	ACT\|ACT
148	GW105	Landrace	ACT\|ACT
149	GW16	Landrace	ACT\|ACT
150	GW2	Landrace	ACT\|ACT
151	GW34	Landrace	ACT\|ACT
152	GW37	Landrace	ACT\|ACT
153	GW58	Landrace	ACT\|ACT
154	GW59	Landrace	ACT\|ACT
155	GW9	Landrace	ACT\|ACT
156	s4	Weedy	ACT\|ACT
157	s6	Improved	ACT\|ACT
158	s7	Landrace	ACT\|ACT
159	s8	Landrace	ACT\|ACT
160	s9	Landrace	ACT\|ACT
161	J101	Landrace	A\|A
162	J103	Improved	ACT\|ACT
163	J112	Landrace	ACTCT\|ACTCT
164	J113	Improved	ACT\|ACT
165	J129	Improved	ACT\|ACT
166	J130	Improved	ACT\|ACT
167	J136	Improved	ACT\|ACT
168	J152	Improved	ACT\|ACT
169	J2	Landrace	ACT\|ACT
170	J20	Landrace	ACT\|ACT
171	J4	Landrace	ACT\|ACT
172	J42	Landrace	ACT\|ACT
173	J44	Landrace	ACT\|ACT
174	J49	Landrace	ACT\|ACT
175	J52	Landrace	ACT\|ACT
176	J53	Landrace	ACT\|ACT
177	J54	Landrace	ACT\|ACT
178	J57	Landrace	ACT\|ACT
179	J59	Landrace	ACT\|ACT
180	J64	Landrace	ACT\|ACT
181	J66	Landrace	ACT\|ACT
182	J67	Landrace	N\|N
183	J69	Landrace	ACT\|ACT
184	J87	Landrace	ACT\|ACT
185	J99	Landrace	ACT\|ACT
186	s45	Landrace	ACT\|ACT
187	s11	Improved	ACT\|ACT
188	s10	Improved	ACT\|ACT
189	s46	Improved	ACT\|ACT
190	s12	Improved	ACT\|ACT
191	s13	Landrace	ACT\|ACT
192	MHMD	Landrace	A\|A
193	s14	Improved	ACT\|ACT
194	s15	Improved	ACT\|ACT
195	s34	Weedy	ACT\|ACT
196	s33	Wild sorghum	A\|A
197	s21	Wild sorghum	ACT\|ACT
198	s16	Wild sorghum	ACT\|ACT
199	s44	Improved	ACT\|ACT
200	s35	Landrace	A\|A
201	s31	Wild sorghum	ACT\|ACT
202	s17	Improved	ACT\|ACT
203	s18	Improved	ACT\|ACT
204	s20	Improved	ACT\|ACT
205	s19	Improved	ACT\|ACT
206	s22	Landrace	A\|A
207	s23	Landrace	A\|A
208	s24	Landrace	ACTCT\|ACTCT
209	s25	Landrace	ACT\|ACT
210	s26	Landrace	A\|A
211	s27	Landrace	A\|A
212	s28	Landrace	ACT\|ACT
213	s29	Landrace	ACT\|ACT
214	s30	Landrace	ACT\|ACT
215	SL25	Wild sorghum	A\|A
216	SL105	Wild sorghum	ACT\|ACT
217	SL108	Wild sorghum	ACT\|ACT
218	SL109	Wild sorghum	ACT\|ACT
219	SL12	Wild sorghum	ACT\|ACT
220	SL129	Wild sorghum	ACT\|ACT
221	SL130	Wild sorghum	ACT\|ACT
222	SL135	Wild sorghum	ACT\|A
223	SL136	Wild sorghum	A\|A
224	SL137	Wild sorghum	ACT\|ACT
225	SL138	Wild sorghum	ACT\|ACT
226	SL140	Wild sorghum	ACT\|ACT
227	SL141	Wild sorghum	ACT\|ACT
228	SL19	Wild sorghum	ACT\|ACT
229	SL28	Wild sorghum	ACTCT\|ACTCT
230	SL32	Wild sorghum	ACTCT\|ACTCT
231	SL35	Wild sorghum	ACT\|ACT
232	SL36	Wild sorghum	ACT\|ACT
233	SL37	Wild sorghum	ACT\|ACTCT
234	SL39	Wild sorghum	ACT\|ACT
235	SL41	Wild sorghum	ACT\|ACT
236	SL43	Wild sorghum	ACT\|ACT
237	SL47	Wild sorghum	ACT\|A
238	SL49	Wild sorghum	ACT\|ACT
239	SL51	Wild sorghum	ACT\|ACT
240	SL53	Wild sorghum	ACT\|ACTCT
241	SL62	Wild sorghum	ACT\|ACT
242	SL83	Wild sorghum	ACT\|ACT
243	SL97	Landrace	ACT\|ACT
244	s48	Improved	ACT\|ACT
245	Tu13	Wild sorghum	A\|A
246	Tu14	Wild sorghum	A\|A
247	Tu30	Wild sorghum	N\|N
248	Tu5	Wild sorghum	ACT\|ACT
249	WSC5	Landrace	ACT\|ACT
250	WSC15	Landrace	ACT\|ACT
251	WSC19	Landrace	ACT\|ACT
252	WSC30	Landrace	ACT\|ACT
253	WSC52	Landrace	ACT\|ACT
254	WSC6	Landrace	ACT\|ACT
255	WSC61	Landrace	ACT\|ACT
256	WSC71	Improved	ACT\|ACT
257	WSC72	Landrace	ACT\|ACT
258	WSC79	Landrace	A\|A
259	WSC94	Landrace	ACT\|ACT
260	WSC99	Landrace	A\|A
261	WSC100	Landrace	A\|A
262	WSC104	Landrace	A\|A
263	WSC105	Landrace	ACT\|ACT
264	WSC12	Landrace	ACT\|ACT
265	WSC13	Landrace	ACT\|ACT
266	WSC16	Landrace	ACT\|ACT
267	WSC17	Landrace	ACT\|ACT
268	WSC18	Landrace	ACT\|ACT
269	WSC20	Landrace	ACT\|ACT
270	WSC24	Landrace	ACT\|ACT
271	WSC25	Landrace	ACT\|ACT
272	WSC29	Landrace	ACT\|ACT
273	WSC31	Landrace	ACT\|ACT
274	WSC32	Landrace	ACT\|ACT
275	WSC34	Landrace	N\|N
276	WSC38	Landrace	ACT\|ACT
277	WSC39	Improved	ACT\|ACT
278	WSC40	Landrace	N\|N
279	WSC54	Landrace	A\|A
280	WSC56	Landrace	N\|N
281	WSC59	Landrace	ACT\|ACT
282	WSC68	Landrace	ACT\|ACT
283	WSC70	Landrace	ACT\|ACT
284	WSC73	Landrace	ACT\|ACT
285	WSC81	Landrace	A\|A
286	WSC85	Improved	A\|A
287	WSC91	Landrace	A\|A
288	WSC93	Landrace	A\|A
289	WSC98	Landrace	ACT\|ACT

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825681	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825681	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825681	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825681	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825681	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p
sbi33825681	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p

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