Variation ID : sbi33825701

Variation Detail



Variation ID sbi33825701
Type INDEL
Position Chr01 47372-47373
Ref /Alleles TA/ T
MAF T: 0.023
5' Flank GATTGCATTATTTGTGCGGGAGCGCGTGCG
3' Flank AAATAAATAAAGAAATAAATATATATGGGG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved TA|TA
2 103 Improved TA|TA
3 107 Improved TA|TA
4 11 Improved TA|TA
5 110 Improved TA|TA
6 123 Landrace TA|TA
7 131 Improved TA|TA
8 132 Improved TA|TA
9 135 Improved TA|TA
10 137 Improved TA|TA
11 138 Improved TA|TA
12 14 Improved N|N
13 140 Improved TA|TA
14 141 Improved TA|TA
15 144 Improved TA|TA
16 150 Improved TA|TA
17 154 Improved TA|TA
18 159 Landrace TA|TA
19 16 Improved TA|TA
20 161 Landrace TA|TA
21 167 Improved TA|TA
22 168 Improved TA|TA
23 170 Improved TA|TA
24 173 Improved TA|TA
25 175 Improved TA|TA
26 176 Improved TA|TA
27 182 Landrace TA|TA
28 186 Improved TA|TA
29 190 Improved TA|TA
30 192 Improved TA|TA
31 194 Improved N|N
32 195 Improved TA|TA
33 197 Improved TA|TA
34 J22 Landrace TA|TA
35 J26 Landrace TA|TA
36 J5 Landrace TA|TA
37 J50 Landrace TA|TA
38 2001 Landrace TA|TA
39 2005 Improved TA|TA
40 2008 Improved TA|TA
41 2009 Landrace N|N
42 201 Improved TA|TA
43 2010 Landrace TA|TA
44 2016 Improved TA|TA
45 2019 Improved TA|TA
46 202 Improved N|N
47 2021 Improved TA|TA
48 2023 Improved TA|TA
49 2026 Improved TA|TA
50 2029 Improved TA|TA
51 2030 Landrace TA|TA
52 2031 Landrace TA|TA
53 2036 Improved TA|TA
54 2037 Improved TA|TA
55 2038 Improved TA|TA
56 2039 Improved TA|TA
57 204 Improved TA|TA
58 2042 Improved TA|TA
59 2043 Improved T|T
60 2048 Improved N|N
61 2049 Improved TA|TA
62 205 Improved TA|TA
63 2050 Improved TA|TA
64 2052 Improved N|N
65 2054 Improved TA|TA
66 2056 Improved TA|TA
67 2059 Improved TA|T
68 206 Improved TA|TA
69 2064 Improved TA|TA
70 2065 Improved TA|TA
71 2067 Improved TA|TA
72 2068 Improved TA|TA
73 2069 Improved TA|TA
74 2071 Improved TA|TA
75 2074 Improved TA|TA
76 2075 Improved TA|TA
77 2076 Improved TA|TA
78 2080 Improved TA|TA
79 2081 Improved TA|TA
80 2082 Improved N|N
81 2086 Improved TA|TA
82 2088 Improved TA|TA
83 260 Wild sorghum N|N
84 261 Improved N|N
85 262 Improved TA|TA
86 263 Improved TA|TA
87 286 Improved N|N
88 29 Improved TA|TA
89 3 Improved N|N
90 302546 S.propinquum TA|TA
91 31 Improved TA|TA
92 32 Improved TA|TA
93 34 Improved TA|TA
94 346 Landrace N|N
95 348 Wild sorghum TA|TA
96 353 Wild sorghum TA|TA
97 355 Wild sorghum TA|TA
98 357 Wild sorghum TA|TA
99 364 Wild sorghum N|N
100 367 Landrace TA|TA
101 s37 S.propinquum TA|TA
102 s38 S.propinquum TA|TA
103 370 Landrace TA|TA
104 377 Wild sorghum N|N
105 392 Wild sorghum TA|TA
106 394 Wild sorghum TA|TA
107 40 Improved TA|TA
108 42 Improved TA|TA
109 43 Improved TA|TA
110 45 Improved TA|TA
111 47 Improved TA|TA
112 48 Improved TA|TA
113 51 Improved TA|TA
114 53 Improved TA|TA
115 56 Improved TA|TA
116 61 Improved N|N
117 62 Improved TA|TA
118 66 Landrace TA|TA
119 67 Improved T|T
120 68 Improved TA|TA
121 70 Improved TA|TA
122 73 Improved TA|TA
123 75 Improved TA|TA
124 88 Improved TA|TA
125 89 Improved N|N
126 91 Improved T|T
127 92 Improved N|N
128 93 Improved N|N
129 94 Improved TA|TA
130 95 Improved N|N
131 96 Improved TA|TA
132 97 Improved TA|TA
133 s1 Improved TA|TA
134 s36 Wild sorghum TA|TA
135 s2 Landrace TA|TA
136 s3 Improved TA|TA
137 s32 Improved TA|TA
138 s43 Weedy TA|TA
139 s40 Landrace TA|TA
140 s41 Weedy TA|TA
141 s39 Landrace TA|TA
142 s42 Landrace TA|TA
143 s47 Improved TA|TA
144 s5 Landrace TA|TA
145 GW102 Landrace TA|TA
146 GW103 Landrace TA|T
147 GW104 Landrace TA|TA
148 GW105 Landrace N|N
149 GW16 Landrace TA|TA
150 GW2 Landrace TA|TA
151 GW34 Landrace TA|TA
152 GW37 Landrace TA|TA
153 GW58 Landrace TA|TA
154 GW59 Landrace TA|TA
155 GW9 Landrace TA|TA
156 s4 Weedy T|T
157 s6 Improved TA|TA
158 s7 Landrace TA|TA
159 s8 Landrace TA|TA
160 s9 Landrace TA|TA
161 J101 Landrace TA|TA
162 J103 Improved TA|TA
163 J112 Landrace TA|TA
164 J113 Improved TA|TA
165 J129 Improved TA|TA
166 J130 Improved N|N
167 J136 Improved TA|TA
168 J152 Improved TA|TA
169 J2 Landrace TA|TA
170 J20 Landrace TA|TA
171 J4 Landrace TA|TA
172 J42 Landrace TA|TA
173 J44 Landrace TA|TA
174 J49 Landrace TA|TA
175 J52 Landrace TA|TA
176 J53 Landrace TA|TA
177 J54 Landrace TA|TA
178 J57 Landrace TA|TA
179 J59 Landrace TA|TA
180 J64 Landrace TA|TA
181 J66 Landrace N|N
182 J67 Landrace TA|TA
183 J69 Landrace TA|TA
184 J87 Landrace TA|TA
185 J99 Landrace TA|TA
186 s45 Landrace TA|TA
187 s11 Improved T|T
188 s10 Improved TA|TA
189 s46 Improved TA|TA
190 s12 Improved TA|TA
191 s13 Landrace TA|TA
192 MHMD Landrace TA|TA
193 s14 Improved TA|TA
194 s15 Improved TA|TA
195 s34 Weedy TA|TA
196 s33 Wild sorghum TA|TA
197 s21 Wild sorghum TA|TA
198 s16 Wild sorghum TA|TA
199 s44 Improved TA|TA
200 s35 Landrace TA|TA
201 s31 Wild sorghum TA|TA
202 s17 Improved TA|TA
203 s18 Improved TA|TA
204 s20 Improved TA|TA
205 s19 Improved TA|TA
206 s22 Landrace TA|TA
207 s23 Landrace TA|TA
208 s24 Landrace TA|TA
209 s25 Landrace TA|TA
210 s26 Landrace TA|TA
211 s27 Landrace TA|TA
212 s28 Landrace TA|TA
213 s29 Landrace TA|TA
214 s30 Landrace TA|TA
215 SL25 Wild sorghum TA|TA
216 SL105 Wild sorghum TA|TA
217 SL108 Wild sorghum TA|TA
218 SL109 Wild sorghum N|N
219 SL12 Wild sorghum TA|TA
220 SL129 Wild sorghum TA|TA
221 SL130 Wild sorghum TA|TA
222 SL135 Wild sorghum TA|TA
223 SL136 Wild sorghum TA|TA
224 SL137 Wild sorghum TA|TA
225 SL138 Wild sorghum TA|TA
226 SL140 Wild sorghum TA|TA
227 SL141 Wild sorghum TA|TA
228 SL19 Wild sorghum N|N
229 SL28 Wild sorghum TA|TA
230 SL32 Wild sorghum N|N
231 SL35 Wild sorghum N|N
232 SL36 Wild sorghum TA|TA
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum N|N
235 SL41 Wild sorghum TA|TA
236 SL43 Wild sorghum TA|TA
237 SL47 Wild sorghum TA|TA
238 SL49 Wild sorghum TA|TA
239 SL51 Wild sorghum TA|TA
240 SL53 Wild sorghum TA|TA
241 SL62 Wild sorghum TA|TA
242 SL83 Wild sorghum TA|TA
243 SL97 Landrace TA|TA
244 s48 Improved TA|TA
245 Tu13 Wild sorghum TA|TA
246 Tu14 Wild sorghum TA|TA
247 Tu30 Wild sorghum TA|TA
248 Tu5 Wild sorghum TA|TA
249 WSC5 Landrace N|N
250 WSC15 Landrace TA|TA
251 WSC19 Landrace TA|TA
252 WSC30 Landrace TA|TA
253 WSC52 Landrace TA|TA
254 WSC6 Landrace TA|TA
255 WSC61 Landrace TA|TA
256 WSC71 Improved TA|TA
257 WSC72 Landrace TA|TA
258 WSC79 Landrace TA|TA
259 WSC94 Landrace TA|TA
260 WSC99 Landrace TA|TA
261 WSC100 Landrace TA|TA
262 WSC104 Landrace TA|TA
263 WSC105 Landrace TA|TA
264 WSC12 Landrace TA|TA
265 WSC13 Landrace TA|TA
266 WSC16 Landrace TA|TA
267 WSC17 Landrace N|N
268 WSC18 Landrace TA|TA
269 WSC20 Landrace TA|TA
270 WSC24 Landrace TA|TA
271 WSC25 Landrace TA|TA
272 WSC29 Landrace TA|TA
273 WSC31 Landrace TA|TA
274 WSC32 Landrace TA|TA
275 WSC34 Landrace TA|TA
276 WSC38 Landrace TA|TA
277 WSC39 Improved TA|TA
278 WSC40 Landrace TA|TA
279 WSC54 Landrace TA|TA
280 WSC56 Landrace TA|TA
281 WSC59 Landrace TA|TA
282 WSC68 Landrace TA|TA
283 WSC70 Landrace TA|TA
284 WSC73 Landrace TA|TA
285 WSC81 Landrace TA|TA
286 WSC85 Improved TA|TA
287 WSC91 Landrace TA|TA
288 WSC93 Landrace TA|TA
289 WSC98 Landrace TA|TA

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi33825701 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.4 mRNA Sobic.001G000400.4.p
sbi33825701 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.3 mRNA Sobic.001G000400.3.p
sbi33825701 Sobic.001G000400 upstream gene variant |MODIFIER Sobic.001G000400.1 mRNA Sobic.001G000400.1.p

Genome Browser