sorgsd

Variation ID : sbi33825702

Variation Detail

Variation ID	sbi33825702
Type	INDEL
Position	Chr01 47412-47415
Ref /Alleles	AAGG/ A
MAF	A: 0.004
5' Flank	AAAGAAATAAATATATATGGGGGCAGACTA
3' Flank	AGGAGGACTCAGCTGAAATATTGACCGTGA

Individual Alleles

id	Sample Id	Type	Alleles
1	101	Improved	AAGG\|AAGG
2	103	Improved	N\|N
3	107	Improved	AAGG\|AAGG
4	11	Improved	AAGG\|AAGG
5	110	Improved	AAGG\|AAGG
6	123	Landrace	AAGG\|AAGG
7	131	Improved	AAGG\|AAGG
8	132	Improved	AAGG\|AAGG
9	135	Improved	AAGG\|AAGG
10	137	Improved	AAGG\|AAGG
11	138	Improved	AAGG\|AAGG
12	14	Improved	N\|N
13	140	Improved	AAGG\|AAGG
14	141	Improved	N\|N
15	144	Improved	AAGG\|AAGG
16	150	Improved	AAGG\|AAGG
17	154	Improved	AAGG\|AAGG
18	159	Landrace	AAGG\|AAGG
19	16	Improved	AAGG\|AAGG
20	161	Landrace	AAGG\|AAGG
21	167	Improved	AAGG\|AAGG
22	168	Improved	AAGG\|AAGG
23	170	Improved	AAGG\|AAGG
24	173	Improved	AAGG\|AAGG
25	175	Improved	AAGG\|AAGG
26	176	Improved	AAGG\|AAGG
27	182	Landrace	AAGG\|AAGG
28	186	Improved	AAGG\|AAGG
29	190	Improved	AAGG\|AAGG
30	192	Improved	AAGG\|AAGG
31	194	Improved	N\|N
32	195	Improved	AAGG\|AAGG
33	197	Improved	AAGG\|AAGG
34	J22	Landrace	AAGG\|AAGG
35	J26	Landrace	AAGG\|AAGG
36	J5	Landrace	AAGG\|AAGG
37	J50	Landrace	AAGG\|AAGG
38	2001	Landrace	AAGG\|AAGG
39	2005	Improved	AAGG\|AAGG
40	2008	Improved	AAGG\|AAGG
41	2009	Landrace	AAGG\|AAGG
42	201	Improved	AAGG\|AAGG
43	2010	Landrace	AAGG\|AAGG
44	2016	Improved	AAGG\|AAGG
45	2019	Improved	N\|N
46	202	Improved	N\|N
47	2021	Improved	AAGG\|AAGG
48	2023	Improved	AAGG\|AAGG
49	2026	Improved	AAGG\|AAGG
50	2029	Improved	AAGG\|AAGG
51	2030	Landrace	AAGG\|AAGG
52	2031	Landrace	AAGG\|AAGG
53	2036	Improved	AAGG\|AAGG
54	2037	Improved	AAGG\|AAGG
55	2038	Improved	AAGG\|AAGG
56	2039	Improved	N\|N
57	204	Improved	AAGG\|AAGG
58	2042	Improved	AAGG\|AAGG
59	2043	Improved	AAGG\|AAGG
60	2048	Improved	N\|N
61	2049	Improved	AAGG\|AAGG
62	205	Improved	AAGG\|AAGG
63	2050	Improved	AAGG\|AAGG
64	2052	Improved	N\|N
65	2054	Improved	AAGG\|AAGG
66	2056	Improved	AAGG\|AAGG
67	2059	Improved	AAGG\|AAGG
68	206	Improved	AAGG\|AAGG
69	2064	Improved	AAGG\|AAGG
70	2065	Improved	AAGG\|AAGG
71	2067	Improved	AAGG\|AAGG
72	2068	Improved	AAGG\|AAGG
73	2069	Improved	AAGG\|AAGG
74	2071	Improved	AAGG\|AAGG
75	2074	Improved	AAGG\|AAGG
76	2075	Improved	AAGG\|AAGG
77	2076	Improved	AAGG\|AAGG
78	2080	Improved	AAGG\|AAGG
79	2081	Improved	AAGG\|AAGG
80	2082	Improved	AAGG\|AAGG
81	2086	Improved	AAGG\|AAGG
82	2088	Improved	AAGG\|AAGG
83	260	Wild sorghum	N\|N
84	261	Improved	AAGG\|AAGG
85	262	Improved	AAGG\|AAGG
86	263	Improved	AAGG\|AAGG
87	286	Improved	AAGG\|AAGG
88	29	Improved	AAGG\|AAGG
89	3	Improved	N\|N
90	302546	S.propinquum	AAGG\|AAGG
91	31	Improved	AAGG\|AAGG
92	32	Improved	AAGG\|AAGG
93	34	Improved	AAGG\|AAGG
94	346	Landrace	N\|N
95	348	Wild sorghum	AAGG\|AAGG
96	353	Wild sorghum	AAGG\|AAGG
97	355	Wild sorghum	AAGG\|AAGG
98	357	Wild sorghum	AAGG\|AAGG
99	364	Wild sorghum	N\|N
100	367	Landrace	AAGG\|AAGG
101	s37	S.propinquum	AAGG\|AAGG
102	s38	S.propinquum	AAGG\|AAGG
103	370	Landrace	AAGG\|AAGG
104	377	Wild sorghum	N\|N
105	392	Wild sorghum	AAGG\|AAGG
106	394	Wild sorghum	AAGG\|AAGG
107	40	Improved	AAGG\|AAGG
108	42	Improved	AAGG\|AAGG
109	43	Improved	AAGG\|AAGG
110	45	Improved	AAGG\|AAGG
111	47	Improved	AAGG\|AAGG
112	48	Improved	AAGG\|AAGG
113	51	Improved	AAGG\|AAGG
114	53	Improved	AAGG\|AAGG
115	56	Improved	AAGG\|AAGG
116	61	Improved	AAGG\|AAGG
117	62	Improved	AAGG\|AAGG
118	66	Landrace	AAGG\|AAGG
119	67	Improved	AAGG\|AAGG
120	68	Improved	AAGG\|AAGG
121	70	Improved	AAGG\|AAGG
122	73	Improved	AAGG\|AAGG
123	75	Improved	AAGG\|AAGG
124	88	Improved	AAGG\|AAGG
125	89	Improved	N\|N
126	91	Improved	N\|N
127	92	Improved	AAGG\|AAGG
128	93	Improved	AAGG\|AAGG
129	94	Improved	AAGG\|AAGG
130	95	Improved	AAGG\|AAGG
131	96	Improved	AAGG\|AAGG
132	97	Improved	AAGG\|AAGG
133	s1	Improved	AAGG\|AAGG
134	s36	Wild sorghum	AAGG\|AAGG
135	s2	Landrace	AAGG\|AAGG
136	s3	Improved	AAGG\|AAGG
137	s32	Improved	AAGG\|AAGG
138	s43	Weedy	AAGG\|AAGG
139	s40	Landrace	AAGG\|AAGG
140	s41	Weedy	AAGG\|AAGG
141	s39	Landrace	AAGG\|AAGG
142	s42	Landrace	AAGG\|AAGG
143	s47	Improved	AAGG\|AAGG
144	s5	Landrace	AAGG\|AAGG
145	GW102	Landrace	AAGG\|AAGG
146	GW103	Landrace	AAGG\|AAGG
147	GW104	Landrace	AAGG\|AAGG
148	GW105	Landrace	N\|N
149	GW16	Landrace	AAGG\|AAGG
150	GW2	Landrace	AAGG\|AAGG
151	GW34	Landrace	AAGG\|AAGG
152	GW37	Landrace	AAGG\|AAGG
153	GW58	Landrace	AAGG\|AAGG
154	GW59	Landrace	AAGG\|AAGG
155	GW9	Landrace	AAGG\|AAGG
156	s4	Weedy	AAGG\|AAGG
157	s6	Improved	AAGG\|AAGG
158	s7	Landrace	AAGG\|AAGG
159	s8	Landrace	AAGG\|AAGG
160	s9	Landrace	AAGG\|AAGG
161	J101	Landrace	AAGG\|AAGG
162	J103	Improved	AAGG\|AAGG
163	J112	Landrace	AAGG\|AAGG
164	J113	Improved	AAGG\|AAGG
165	J129	Improved	AAGG\|AAGG
166	J130	Improved	N\|N
167	J136	Improved	AAGG\|AAGG
168	J152	Improved	AAGG\|AAGG
169	J2	Landrace	AAGG\|AAGG
170	J20	Landrace	AAGG\|AAGG
171	J4	Landrace	AAGG\|AAGG
172	J42	Landrace	AAGG\|AAGG
173	J44	Landrace	AAGG\|AAGG
174	J49	Landrace	AAGG\|AAGG
175	J52	Landrace	N\|N
176	J53	Landrace	N\|N
177	J54	Landrace	AAGG\|AAGG
178	J57	Landrace	AAGG\|AAGG
179	J59	Landrace	AAGG\|AAGG
180	J64	Landrace	AAGG\|AAGG
181	J66	Landrace	N\|N
182	J67	Landrace	AAGG\|AAGG
183	J69	Landrace	AAGG\|AAGG
184	J87	Landrace	AAGG\|AAGG
185	J99	Landrace	AAGG\|AAGG
186	s45	Landrace	AAGG\|AAGG
187	s11	Improved	AAGG\|AAGG
188	s10	Improved	AAGG\|AAGG
189	s46	Improved	AAGG\|AAGG
190	s12	Improved	AAGG\|AAGG
191	s13	Landrace	AAGG\|AAGG
192	MHMD	Landrace	AAGG\|AAGG
193	s14	Improved	AAGG\|AAGG
194	s15	Improved	AAGG\|AAGG
195	s34	Weedy	AAGG\|AAGG
196	s33	Wild sorghum	AAGG\|AAGG
197	s21	Wild sorghum	AAGG\|AAGG
198	s16	Wild sorghum	AAGG\|AAGG
199	s44	Improved	AAGG\|AAGG
200	s35	Landrace	AAGG\|AAGG
201	s31	Wild sorghum	AAGG\|AAGG
202	s17	Improved	AAGG\|AAGG
203	s18	Improved	AAGG\|AAGG
204	s20	Improved	AAGG\|AAGG
205	s19	Improved	AAGG\|AAGG
206	s22	Landrace	AAGG\|AAGG
207	s23	Landrace	AAGG\|AAGG
208	s24	Landrace	AAGG\|AAGG
209	s25	Landrace	AAGG\|AAGG
210	s26	Landrace	AAGG\|AAGG
211	s27	Landrace	AAGG\|AAGG
212	s28	Landrace	AAGG\|AAGG
213	s29	Landrace	AAGG\|AAGG
214	s30	Landrace	AAGG\|AAGG
215	SL25	Wild sorghum	AAGG\|AAGG
216	SL105	Wild sorghum	AAGG\|AAGG
217	SL108	Wild sorghum	AAGG\|AAGG
218	SL109	Wild sorghum	AAGG\|AAGG
219	SL12	Wild sorghum	AAGG\|AAGG
220	SL129	Wild sorghum	AAGG\|AAGG
221	SL130	Wild sorghum	AAGG\|AAGG
222	SL135	Wild sorghum	AAGG\|AAGG
223	SL136	Wild sorghum	AAGG\|AAGG
224	SL137	Wild sorghum	AAGG\|AAGG
225	SL138	Wild sorghum	AAGG\|AAGG
226	SL140	Wild sorghum	AAGG\|AAGG
227	SL141	Wild sorghum	AAGG\|AAGG
228	SL19	Wild sorghum	AAGG\|AAGG
229	SL28	Wild sorghum	AAGG\|AAGG
230	SL32	Wild sorghum	N\|N
231	SL35	Wild sorghum	AAGG\|AAGG
232	SL36	Wild sorghum	AAGG\|AAGG
233	SL37	Wild sorghum	N\|N
234	SL39	Wild sorghum	N\|N
235	SL41	Wild sorghum	AAGG\|AAGG
236	SL43	Wild sorghum	AAGG\|AAGG
237	SL47	Wild sorghum	AAGG\|AAGG
238	SL49	Wild sorghum	AAGG\|AAGG
239	SL51	Wild sorghum	A\|A
240	SL53	Wild sorghum	AAGG\|AAGG
241	SL62	Wild sorghum	AAGG\|AAGG
242	SL83	Wild sorghum	AAGG\|AAGG
243	SL97	Landrace	AAGG\|AAGG
244	s48	Improved	AAGG\|AAGG
245	Tu13	Wild sorghum	AAGG\|AAGG
246	Tu14	Wild sorghum	AAGG\|AAGG
247	Tu30	Wild sorghum	AAGG\|AAGG
248	Tu5	Wild sorghum	AAGG\|AAGG
249	WSC5	Landrace	AAGG\|AAGG
250	WSC15	Landrace	AAGG\|AAGG
251	WSC19	Landrace	AAGG\|AAGG
252	WSC30	Landrace	AAGG\|AAGG
253	WSC52	Landrace	AAGG\|AAGG
254	WSC6	Landrace	AAGG\|AAGG
255	WSC61	Landrace	AAGG\|AAGG
256	WSC71	Improved	AAGG\|AAGG
257	WSC72	Landrace	AAGG\|AAGG
258	WSC79	Landrace	AAGG\|AAGG
259	WSC94	Landrace	AAGG\|AAGG
260	WSC99	Landrace	AAGG\|AAGG
261	WSC100	Landrace	AAGG\|AAGG
262	WSC104	Landrace	AAGG\|AAGG
263	WSC105	Landrace	AAGG\|AAGG
264	WSC12	Landrace	AAGG\|AAGG
265	WSC13	Landrace	AAGG\|AAGG
266	WSC16	Landrace	AAGG\|AAGG
267	WSC17	Landrace	N\|N
268	WSC18	Landrace	AAGG\|AAGG
269	WSC20	Landrace	AAGG\|AAGG
270	WSC24	Landrace	AAGG\|AAGG
271	WSC25	Landrace	AAGG\|AAGG
272	WSC29	Landrace	AAGG\|AAGG
273	WSC31	Landrace	AAGG\|AAGG
274	WSC32	Landrace	AAGG\|AAGG
275	WSC34	Landrace	AAGG\|AAGG
276	WSC38	Landrace	AAGG\|AAGG
277	WSC39	Improved	AAGG\|AAGG
278	WSC40	Landrace	AAGG\|AAGG
279	WSC54	Landrace	AAGG\|AAGG
280	WSC56	Landrace	AAGG\|AAGG
281	WSC59	Landrace	AAGG\|AAGG
282	WSC68	Landrace	AAGG\|AAGG
283	WSC70	Landrace	AAGG\|AAGG
284	WSC73	Landrace	AAGG\|AAGG
285	WSC81	Landrace	AAGG\|AAGG
286	WSC85	Improved	AAGG\|AAGG
287	WSC91	Landrace	AAGG\|AAGG
288	WSC93	Landrace	N\|N
289	WSC98	Landrace	AAGG\|AAGG

Alleles Distribution

Gene Annotation

Variation ID	Gene	Consequence	Transcript	Type	cDNA	Source/target codon	Protein Name	protein pos	source/target Amino acid
sbi33825702	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.4	mRNA			Sobic.001G000400.4.p
sbi33825702	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.3	mRNA			Sobic.001G000400.3.p
sbi33825702	Sobic.001G000400	upstream gene variant \|MODIFIER	Sobic.001G000400.1	mRNA			Sobic.001G000400.1.p

Genome Browser