Variation ID : sbi401

Variation Detail



Variation ID sbi401
Type SNP
Position Chr01 5792-5792
Ref /Alleles T/ C or G
MAF T: 0.400
5' Flank GTTTTAGAATTAGCTGCTCCCTAGGGGGGT
3' Flank AGGGTCGTATTTATATGGGGCGTCTAGCCT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved C|C
2 103 Improved C|C
3 107 Improved C|C
4 11 Improved C|C
5 110 Improved T|T
6 123 Landrace C|C
7 131 Improved T|T
8 132 Improved C|C
9 135 Improved C|C
10 137 Improved T|T
11 138 Improved T|T
12 14 Improved T|T
13 140 Improved T|T
14 141 Improved C|C
15 144 Improved C|C
16 150 Improved C|C
17 154 Improved C|C
18 159 Landrace C|C
19 16 Improved T|T
20 161 Landrace T|T
21 167 Improved T|T
22 168 Improved T|T
23 170 Improved T|T
24 173 Improved C|C
25 175 Improved C|C
26 176 Improved T|T
27 182 Landrace G|G
28 186 Improved T|T
29 190 Improved T|T
30 192 Improved T|T
31 194 Improved G|G
32 195 Improved G|G
33 197 Improved G|G
34 J22 Landrace G|G
35 J26 Landrace T|T
36 J5 Landrace G|G
37 J50 Landrace T|T
38 2001 Landrace G|G
39 2005 Improved G|G
40 2008 Improved N|N
41 2009 Landrace C|C
42 201 Improved C|C
43 2010 Landrace C|C
44 2016 Improved G|G
45 2019 Improved T|T
46 202 Improved T|T
47 2021 Improved G|G
48 2023 Improved G|G
49 2026 Improved T|T
50 2029 Improved G|G
51 2030 Landrace C|C
52 2031 Landrace T|T
53 2036 Improved T|T
54 2037 Improved C|C
55 2038 Improved C|C
56 2039 Improved G|G
57 204 Improved T|C
58 2042 Improved C|C
59 2043 Improved C|C
60 2048 Improved C|C
61 2049 Improved T|T
62 205 Improved T|T
63 2050 Improved C|C
64 2052 Improved T|T
65 2054 Improved G|G
66 2056 Improved T|T
67 2059 Improved C|C
68 206 Improved T|T
69 2064 Improved G|G
70 2065 Improved T|T
71 2067 Improved G|G
72 2068 Improved G|G
73 2069 Improved G|G
74 2071 Improved C|C
75 2074 Improved G|G
76 2075 Improved T|T
77 2076 Improved T|T
78 2080 Improved G|G
79 2081 Improved T|T
80 2082 Improved G|G
81 2086 Improved G|G
82 2088 Improved T|T
83 260 Wild sorghum C|C
84 261 Improved T|T
85 262 Improved G|G
86 263 Improved T|T
87 286 Improved T|T
88 29 Improved C|C
89 3 Improved T|T
90 302546 S.propinquum C|C
91 31 Improved T|C
92 32 Improved T|T
93 34 Improved T|C
94 346 Landrace T|T
95 348 Wild sorghum C|C
96 353 Wild sorghum C|C
97 355 Wild sorghum C|C
98 357 Wild sorghum C|C
99 364 Wild sorghum C|C
100 367 Landrace T|T
101 s37 S.propinquum C|C
102 s38 S.propinquum C|C
103 370 Landrace C|C
104 377 Wild sorghum C|C
105 392 Wild sorghum C|C
106 394 Wild sorghum C|C
107 40 Improved T|C
108 42 Improved C|C
109 43 Improved T|C
110 45 Improved C|C
111 47 Improved T|T
112 48 Improved G|G
113 51 Improved C|C
114 53 Improved C|C
115 56 Improved T|T
116 61 Improved T|T
117 62 Improved T|T
118 66 Landrace C|C
119 67 Improved C|C
120 68 Improved T|T
121 70 Improved G|G
122 73 Improved T|T
123 75 Improved T|T
124 88 Improved C|C
125 89 Improved C|C
126 91 Improved C|C
127 92 Improved C|C
128 93 Improved C|C
129 94 Improved C|C
130 95 Improved C|C
131 96 Improved C|C
132 97 Improved C|C
133 s1 Improved T|T
134 s36 Wild sorghum C|C
135 s2 Landrace T|T
136 s3 Improved T|T
137 s32 Improved T|T
138 s43 Weedy T|T
139 s40 Landrace C|C
140 s41 Weedy C|C
141 s39 Landrace T|G
142 s42 Landrace C|C
143 s47 Improved T|T
144 s5 Landrace C|C
145 GW102 Landrace T|T
146 GW103 Landrace C|C
147 GW104 Landrace T|T
148 GW105 Landrace C|C
149 GW16 Landrace G|G
150 GW2 Landrace T|T
151 GW34 Landrace G|G
152 GW37 Landrace G|G
153 GW58 Landrace C|C
154 GW59 Landrace N|N
155 GW9 Landrace G|G
156 s4 Weedy G|G
157 s6 Improved T|T
158 s7 Landrace C|C
159 s8 Landrace T|T
160 s9 Landrace T|T
161 J101 Landrace C|C
162 J103 Improved T|T
163 J112 Landrace C|C
164 J113 Improved C|C
165 J129 Improved T|T
166 J130 Improved T|T
167 J136 Improved T|T
168 J152 Improved T|T
169 J2 Landrace T|T
170 J20 Landrace T|T
171 J4 Landrace T|T
172 J42 Landrace T|T
173 J44 Landrace T|T
174 J49 Landrace G|G
175 J52 Landrace T|T
176 J53 Landrace G|G
177 J54 Landrace G|G
178 J57 Landrace T|T
179 J59 Landrace T|T
180 J64 Landrace T|T
181 J66 Landrace T|T
182 J67 Landrace T|T
183 J69 Landrace T|T
184 J87 Landrace G|G
185 J99 Landrace T|T
186 s45 Landrace T|T
187 s11 Improved C|C
188 s10 Improved T|T
189 s46 Improved T|T
190 s12 Improved T|T
191 s13 Landrace T|T
192 MHMD Landrace C|C
193 s14 Improved T|T
194 s15 Improved T|T
195 s34 Weedy C|C
196 s33 Wild sorghum C|C
197 s21 Wild sorghum T|T
198 s16 Wild sorghum C|C
199 s44 Improved T|T
200 s35 Landrace C|C
201 s31 Wild sorghum C|C
202 s17 Improved T|T
203 s18 Improved T|T
204 s20 Improved T|T
205 s19 Improved T|T
206 s22 Landrace C|C
207 s23 Landrace C|C
208 s24 Landrace C|C
209 s25 Landrace T|T
210 s26 Landrace C|C
211 s27 Landrace C|C
212 s28 Landrace T|T
213 s29 Landrace C|C
214 s30 Landrace T|T
215 SL25 Wild sorghum C|C
216 SL105 Wild sorghum C|C
217 SL108 Wild sorghum C|C
218 SL109 Wild sorghum C|C
219 SL12 Wild sorghum C|C
220 SL129 Wild sorghum C|C
221 SL130 Wild sorghum C|C
222 SL135 Wild sorghum T|T
223 SL136 Wild sorghum N|N
224 SL137 Wild sorghum C|C
225 SL138 Wild sorghum C|C
226 SL140 Wild sorghum C|C
227 SL141 Wild sorghum C|C
228 SL19 Wild sorghum C|C
229 SL28 Wild sorghum C|C
230 SL32 Wild sorghum C|C
231 SL35 Wild sorghum C|C
232 SL36 Wild sorghum C|C
233 SL37 Wild sorghum C|C
234 SL39 Wild sorghum T|T
235 SL41 Wild sorghum C|C
236 SL43 Wild sorghum T|C
237 SL47 Wild sorghum C|C
238 SL49 Wild sorghum N|N
239 SL51 Wild sorghum C|C
240 SL53 Wild sorghum C|C
241 SL62 Wild sorghum C|C
242 SL83 Wild sorghum C|C
243 SL97 Landrace C|C
244 s48 Improved T|C
245 Tu13 Wild sorghum C|C
246 Tu14 Wild sorghum C|C
247 Tu30 Wild sorghum C|C
248 Tu5 Wild sorghum C|C
249 WSC5 Landrace G|G
250 WSC15 Landrace G|G
251 WSC19 Landrace T|T
252 WSC30 Landrace C|C
253 WSC52 Landrace C|C
254 WSC6 Landrace G|G
255 WSC61 Landrace T|T
256 WSC71 Improved T|T
257 WSC72 Landrace T|T
258 WSC79 Landrace C|C
259 WSC94 Landrace T|T
260 WSC99 Landrace C|C
261 WSC100 Landrace N|N
262 WSC104 Landrace C|C
263 WSC105 Landrace T|T
264 WSC12 Landrace T|T
265 WSC13 Landrace T|T
266 WSC16 Landrace G|G
267 WSC17 Landrace T|T
268 WSC18 Landrace T|T
269 WSC20 Landrace T|T
270 WSC24 Landrace T|T
271 WSC25 Landrace G|G
272 WSC29 Landrace G|G
273 WSC31 Landrace C|C
274 WSC32 Landrace C|C
275 WSC34 Landrace C|C
276 WSC38 Landrace C|C
277 WSC39 Improved G|G
278 WSC40 Landrace C|C
279 WSC54 Landrace C|C
280 WSC56 Landrace T|C
281 WSC59 Landrace C|C
282 WSC68 Landrace T|T
283 WSC70 Landrace T|T
284 WSC73 Landrace T|T
285 WSC81 Landrace C|C
286 WSC85 Improved C|C
287 WSC91 Landrace C|C
288 WSC93 Landrace C|C
289 WSC98 Landrace G|G

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi401 Sobic.001G000100 downstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p
sbi401 Sobic.001G000100 downstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p

Genome Browser