Variation ID : sbi435

Variation Detail



Variation ID sbi435
Type SNP
Position Chr01 6287-6287
Ref /Alleles G/ T
MAF T: 0.002
5' Flank AGAAACCCAAAACAAGTATTGATCATACTT
3' Flank TGTGCAAAGACACATTGCTTTGAGCTAAAG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved G|G
2 103 Improved G|G
3 107 Improved G|G
4 11 Improved G|G
5 110 Improved G|G
6 123 Landrace G|G
7 131 Improved G|G
8 132 Improved G|G
9 135 Improved G|G
10 137 Improved G|G
11 138 Improved G|G
12 14 Improved G|G
13 140 Improved G|G
14 141 Improved G|G
15 144 Improved G|G
16 150 Improved G|G
17 154 Improved G|G
18 159 Landrace G|G
19 16 Improved G|G
20 161 Landrace G|G
21 167 Improved G|G
22 168 Improved G|G
23 170 Improved G|G
24 173 Improved G|G
25 175 Improved G|G
26 176 Improved G|G
27 182 Landrace G|G
28 186 Improved G|G
29 190 Improved G|G
30 192 Improved G|G
31 194 Improved G|G
32 195 Improved G|G
33 197 Improved G|G
34 J22 Landrace G|G
35 J26 Landrace G|G
36 J5 Landrace G|G
37 J50 Landrace G|G
38 2001 Landrace G|T
39 2005 Improved G|G
40 2008 Improved G|G
41 2009 Landrace G|G
42 201 Improved G|G
43 2010 Landrace G|G
44 2016 Improved N|N
45 2019 Improved G|G
46 202 Improved G|G
47 2021 Improved G|G
48 2023 Improved G|G
49 2026 Improved G|G
50 2029 Improved G|G
51 2030 Landrace G|G
52 2031 Landrace G|G
53 2036 Improved G|G
54 2037 Improved G|G
55 2038 Improved G|G
56 2039 Improved G|G
57 204 Improved G|G
58 2042 Improved G|G
59 2043 Improved G|G
60 2048 Improved G|G
61 2049 Improved G|G
62 205 Improved G|G
63 2050 Improved G|G
64 2052 Improved G|G
65 2054 Improved G|G
66 2056 Improved G|G
67 2059 Improved G|G
68 206 Improved G|G
69 2064 Improved G|G
70 2065 Improved G|G
71 2067 Improved G|G
72 2068 Improved G|G
73 2069 Improved G|G
74 2071 Improved G|G
75 2074 Improved G|G
76 2075 Improved G|G
77 2076 Improved G|G
78 2080 Improved G|G
79 2081 Improved G|G
80 2082 Improved G|G
81 2086 Improved G|G
82 2088 Improved G|G
83 260 Wild sorghum G|G
84 261 Improved G|G
85 262 Improved G|G
86 263 Improved G|G
87 286 Improved G|G
88 29 Improved G|G
89 3 Improved G|G
90 302546 S.propinquum G|G
91 31 Improved G|G
92 32 Improved G|G
93 34 Improved G|G
94 346 Landrace G|G
95 348 Wild sorghum G|G
96 353 Wild sorghum G|G
97 355 Wild sorghum G|G
98 357 Wild sorghum G|G
99 364 Wild sorghum G|G
100 367 Landrace G|G
101 s37 S.propinquum G|G
102 s38 S.propinquum G|G
103 370 Landrace G|G
104 377 Wild sorghum G|G
105 392 Wild sorghum G|G
106 394 Wild sorghum G|G
107 40 Improved G|G
108 42 Improved G|G
109 43 Improved G|G
110 45 Improved G|G
111 47 Improved G|G
112 48 Improved G|G
113 51 Improved G|G
114 53 Improved G|G
115 56 Improved G|G
116 61 Improved G|G
117 62 Improved G|G
118 66 Landrace G|G
119 67 Improved G|G
120 68 Improved G|G
121 70 Improved G|G
122 73 Improved G|G
123 75 Improved G|G
124 88 Improved G|G
125 89 Improved G|G
126 91 Improved G|G
127 92 Improved G|G
128 93 Improved G|G
129 94 Improved G|G
130 95 Improved G|G
131 96 Improved G|G
132 97 Improved G|G
133 s1 Improved G|G
134 s36 Wild sorghum G|G
135 s2 Landrace G|G
136 s3 Improved G|G
137 s32 Improved G|G
138 s43 Weedy G|G
139 s40 Landrace G|G
140 s41 Weedy G|G
141 s39 Landrace G|G
142 s42 Landrace G|G
143 s47 Improved G|G
144 s5 Landrace G|G
145 GW102 Landrace G|G
146 GW103 Landrace G|G
147 GW104 Landrace G|G
148 GW105 Landrace G|G
149 GW16 Landrace G|G
150 GW2 Landrace G|G
151 GW34 Landrace G|G
152 GW37 Landrace G|G
153 GW58 Landrace G|G
154 GW59 Landrace G|G
155 GW9 Landrace G|G
156 s4 Weedy G|G
157 s6 Improved G|G
158 s7 Landrace G|G
159 s8 Landrace G|G
160 s9 Landrace G|G
161 J101 Landrace G|G
162 J103 Improved G|G
163 J112 Landrace G|G
164 J113 Improved G|G
165 J129 Improved G|G
166 J130 Improved G|G
167 J136 Improved G|G
168 J152 Improved G|G
169 J2 Landrace G|G
170 J20 Landrace G|G
171 J4 Landrace G|G
172 J42 Landrace G|G
173 J44 Landrace G|G
174 J49 Landrace G|G
175 J52 Landrace G|G
176 J53 Landrace G|G
177 J54 Landrace G|G
178 J57 Landrace N|N
179 J59 Landrace N|N
180 J64 Landrace G|G
181 J66 Landrace G|G
182 J67 Landrace N|N
183 J69 Landrace G|G
184 J87 Landrace G|G
185 J99 Landrace G|G
186 s45 Landrace G|G
187 s11 Improved G|G
188 s10 Improved G|G
189 s46 Improved G|G
190 s12 Improved G|G
191 s13 Landrace G|G
192 MHMD Landrace G|G
193 s14 Improved G|G
194 s15 Improved G|G
195 s34 Weedy G|G
196 s33 Wild sorghum G|G
197 s21 Wild sorghum G|G
198 s16 Wild sorghum G|G
199 s44 Improved G|G
200 s35 Landrace G|G
201 s31 Wild sorghum G|G
202 s17 Improved G|G
203 s18 Improved G|G
204 s20 Improved G|G
205 s19 Improved G|G
206 s22 Landrace G|G
207 s23 Landrace G|G
208 s24 Landrace G|G
209 s25 Landrace G|G
210 s26 Landrace G|G
211 s27 Landrace G|G
212 s28 Landrace G|G
213 s29 Landrace G|G
214 s30 Landrace G|G
215 SL25 Wild sorghum G|G
216 SL105 Wild sorghum G|G
217 SL108 Wild sorghum G|G
218 SL109 Wild sorghum G|G
219 SL12 Wild sorghum G|G
220 SL129 Wild sorghum G|G
221 SL130 Wild sorghum G|G
222 SL135 Wild sorghum G|G
223 SL136 Wild sorghum G|G
224 SL137 Wild sorghum G|G
225 SL138 Wild sorghum G|G
226 SL140 Wild sorghum G|G
227 SL141 Wild sorghum G|G
228 SL19 Wild sorghum G|G
229 SL28 Wild sorghum G|G
230 SL32 Wild sorghum G|G
231 SL35 Wild sorghum G|G
232 SL36 Wild sorghum G|G
233 SL37 Wild sorghum G|G
234 SL39 Wild sorghum G|G
235 SL41 Wild sorghum G|G
236 SL43 Wild sorghum G|G
237 SL47 Wild sorghum G|G
238 SL49 Wild sorghum G|G
239 SL51 Wild sorghum G|G
240 SL53 Wild sorghum G|G
241 SL62 Wild sorghum G|G
242 SL83 Wild sorghum G|G
243 SL97 Landrace G|G
244 s48 Improved G|G
245 Tu13 Wild sorghum G|G
246 Tu14 Wild sorghum G|G
247 Tu30 Wild sorghum G|G
248 Tu5 Wild sorghum G|G
249 WSC5 Landrace G|G
250 WSC15 Landrace G|G
251 WSC19 Landrace G|G
252 WSC30 Landrace G|G
253 WSC52 Landrace N|N
254 WSC6 Landrace G|G
255 WSC61 Landrace G|G
256 WSC71 Improved G|G
257 WSC72 Landrace G|G
258 WSC79 Landrace G|G
259 WSC94 Landrace G|G
260 WSC99 Landrace G|G
261 WSC100 Landrace G|G
262 WSC104 Landrace G|G
263 WSC105 Landrace G|G
264 WSC12 Landrace G|G
265 WSC13 Landrace G|G
266 WSC16 Landrace G|G
267 WSC17 Landrace G|G
268 WSC18 Landrace G|G
269 WSC20 Landrace G|G
270 WSC24 Landrace G|G
271 WSC25 Landrace G|G
272 WSC29 Landrace G|G
273 WSC31 Landrace G|G
274 WSC32 Landrace G|G
275 WSC34 Landrace G|G
276 WSC38 Landrace G|G
277 WSC39 Improved G|G
278 WSC40 Landrace G|G
279 WSC54 Landrace G|G
280 WSC56 Landrace G|G
281 WSC59 Landrace G|G
282 WSC68 Landrace G|G
283 WSC70 Landrace G|G
284 WSC73 Landrace G|G
285 WSC81 Landrace G|G
286 WSC85 Improved G|G
287 WSC91 Landrace G|G
288 WSC93 Landrace G|G
289 WSC98 Landrace G|G

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi435 Sobic.001G000100 downstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p
sbi435 Sobic.001G000200 downstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

Genome Browser