Variation ID : sbi558

Variation Detail



Variation ID sbi558
Type SNP
Position Chr01 7146-7146
Ref /Alleles C/ G
MAF C: 0.448
5' Flank GTAAGCCAGGTGAGAAGTTTTCATGGACTT
3' Flank TTGGTTTTTACAGGAGATTTGTTAGACATT

Individual Alleles

id Sample Id Type Alleles
1 101 Improved G|G
2 103 Improved G|G
3 107 Improved C|C
4 11 Improved G|G
5 110 Improved C|C
6 123 Landrace C|G
7 131 Improved C|C
8 132 Improved G|G
9 135 Improved G|G
10 137 Improved C|C
11 138 Improved C|C
12 14 Improved C|C
13 140 Improved C|C
14 141 Improved G|G
15 144 Improved G|G
16 150 Improved G|G
17 154 Improved G|G
18 159 Landrace C|C
19 16 Improved C|C
20 161 Landrace C|C
21 167 Improved C|C
22 168 Improved C|C
23 170 Improved C|C
24 173 Improved G|G
25 175 Improved G|G
26 176 Improved C|C
27 182 Landrace G|G
28 186 Improved C|C
29 190 Improved C|C
30 192 Improved C|C
31 194 Improved G|G
32 195 Improved G|G
33 197 Improved G|G
34 J22 Landrace G|G
35 J26 Landrace C|C
36 J5 Landrace G|G
37 J50 Landrace C|C
38 2001 Landrace G|G
39 2005 Improved G|G
40 2008 Improved N|N
41 2009 Landrace G|G
42 201 Improved G|G
43 2010 Landrace G|G
44 2016 Improved N|N
45 2019 Improved C|C
46 202 Improved C|C
47 2021 Improved G|G
48 2023 Improved G|G
49 2026 Improved C|C
50 2029 Improved G|G
51 2030 Landrace G|G
52 2031 Landrace C|C
53 2036 Improved C|C
54 2037 Improved G|G
55 2038 Improved G|G
56 2039 Improved G|G
57 204 Improved C|G
58 2042 Improved C|C
59 2043 Improved G|G
60 2048 Improved C|C
61 2049 Improved C|C
62 205 Improved C|C
63 2050 Improved G|G
64 2052 Improved C|C
65 2054 Improved G|G
66 2056 Improved N|N
67 2059 Improved G|G
68 206 Improved C|C
69 2064 Improved G|G
70 2065 Improved C|C
71 2067 Improved G|G
72 2068 Improved G|G
73 2069 Improved G|G
74 2071 Improved G|G
75 2074 Improved G|G
76 2075 Improved C|C
77 2076 Improved C|C
78 2080 Improved G|G
79 2081 Improved C|C
80 2082 Improved G|G
81 2086 Improved G|G
82 2088 Improved C|C
83 260 Wild sorghum C|C
84 261 Improved C|C
85 262 Improved G|G
86 263 Improved C|C
87 286 Improved C|C
88 29 Improved G|G
89 3 Improved C|C
90 302546 S.propinquum G|G
91 31 Improved C|G
92 32 Improved C|C
93 34 Improved G|G
94 346 Landrace N|N
95 348 Wild sorghum G|G
96 353 Wild sorghum G|G
97 355 Wild sorghum G|G
98 357 Wild sorghum G|G
99 364 Wild sorghum G|G
100 367 Landrace C|C
101 s37 S.propinquum G|G
102 s38 S.propinquum C|G
103 370 Landrace C|C
104 377 Wild sorghum G|G
105 392 Wild sorghum G|G
106 394 Wild sorghum G|G
107 40 Improved C|G
108 42 Improved G|G
109 43 Improved C|G
110 45 Improved G|G
111 47 Improved C|C
112 48 Improved G|G
113 51 Improved G|G
114 53 Improved G|G
115 56 Improved C|C
116 61 Improved C|C
117 62 Improved C|C
118 66 Landrace C|C
119 67 Improved G|G
120 68 Improved C|C
121 70 Improved G|G
122 73 Improved C|C
123 75 Improved C|C
124 88 Improved G|G
125 89 Improved G|G
126 91 Improved C|G
127 92 Improved G|G
128 93 Improved G|G
129 94 Improved G|G
130 95 Improved G|G
131 96 Improved G|G
132 97 Improved G|G
133 s1 Improved C|C
134 s36 Wild sorghum G|G
135 s2 Landrace C|C
136 s3 Improved C|C
137 s32 Improved C|C
138 s43 Weedy C|C
139 s40 Landrace G|G
140 s41 Weedy G|G
141 s39 Landrace C|G
142 s42 Landrace G|G
143 s47 Improved C|C
144 s5 Landrace G|G
145 GW102 Landrace C|C
146 GW103 Landrace G|G
147 GW104 Landrace N|N
148 GW105 Landrace G|G
149 GW16 Landrace G|G
150 GW2 Landrace C|C
151 GW34 Landrace G|G
152 GW37 Landrace G|G
153 GW58 Landrace G|G
154 GW59 Landrace G|G
155 GW9 Landrace G|G
156 s4 Weedy G|G
157 s6 Improved C|C
158 s7 Landrace G|G
159 s8 Landrace C|C
160 s9 Landrace C|C
161 J101 Landrace G|G
162 J103 Improved C|C
163 J112 Landrace G|G
164 J113 Improved C|C
165 J129 Improved C|C
166 J130 Improved C|C
167 J136 Improved C|C
168 J152 Improved C|C
169 J2 Landrace C|C
170 J20 Landrace C|C
171 J4 Landrace C|C
172 J42 Landrace C|C
173 J44 Landrace C|C
174 J49 Landrace G|G
175 J52 Landrace C|C
176 J53 Landrace G|G
177 J54 Landrace G|G
178 J57 Landrace C|C
179 J59 Landrace C|C
180 J64 Landrace C|C
181 J66 Landrace C|C
182 J67 Landrace C|C
183 J69 Landrace C|C
184 J87 Landrace G|G
185 J99 Landrace C|C
186 s45 Landrace C|C
187 s11 Improved G|G
188 s10 Improved C|C
189 s46 Improved C|C
190 s12 Improved C|C
191 s13 Landrace C|C
192 MHMD Landrace G|G
193 s14 Improved C|C
194 s15 Improved C|C
195 s34 Weedy G|G
196 s33 Wild sorghum G|G
197 s21 Wild sorghum C|C
198 s16 Wild sorghum G|G
199 s44 Improved C|C
200 s35 Landrace G|G
201 s31 Wild sorghum G|G
202 s17 Improved C|C
203 s18 Improved C|C
204 s20 Improved C|C
205 s19 Improved C|C
206 s22 Landrace G|G
207 s23 Landrace G|G
208 s24 Landrace G|G
209 s25 Landrace C|C
210 s26 Landrace G|G
211 s27 Landrace G|G
212 s28 Landrace C|C
213 s29 Landrace G|G
214 s30 Landrace C|C
215 SL25 Wild sorghum G|G
216 SL105 Wild sorghum G|G
217 SL108 Wild sorghum G|G
218 SL109 Wild sorghum G|G
219 SL12 Wild sorghum G|G
220 SL129 Wild sorghum G|G
221 SL130 Wild sorghum G|G
222 SL135 Wild sorghum C|G
223 SL136 Wild sorghum G|G
224 SL137 Wild sorghum N|N
225 SL138 Wild sorghum G|G
226 SL140 Wild sorghum G|G
227 SL141 Wild sorghum G|G
228 SL19 Wild sorghum G|G
229 SL28 Wild sorghum G|G
230 SL32 Wild sorghum G|G
231 SL35 Wild sorghum G|G
232 SL36 Wild sorghum G|G
233 SL37 Wild sorghum N|N
234 SL39 Wild sorghum C|C
235 SL41 Wild sorghum G|G
236 SL43 Wild sorghum G|G
237 SL47 Wild sorghum C|G
238 SL49 Wild sorghum G|G
239 SL51 Wild sorghum G|G
240 SL53 Wild sorghum G|G
241 SL62 Wild sorghum G|G
242 SL83 Wild sorghum C|G
243 SL97 Landrace G|G
244 s48 Improved C|C
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum G|G
247 Tu30 Wild sorghum G|G
248 Tu5 Wild sorghum G|G
249 WSC5 Landrace N|N
250 WSC15 Landrace G|G
251 WSC19 Landrace C|C
252 WSC30 Landrace C|C
253 WSC52 Landrace C|C
254 WSC6 Landrace G|G
255 WSC61 Landrace C|C
256 WSC71 Improved C|C
257 WSC72 Landrace C|C
258 WSC79 Landrace G|G
259 WSC94 Landrace C|C
260 WSC99 Landrace G|G
261 WSC100 Landrace G|G
262 WSC104 Landrace G|G
263 WSC105 Landrace C|C
264 WSC12 Landrace C|C
265 WSC13 Landrace C|C
266 WSC16 Landrace G|G
267 WSC17 Landrace C|C
268 WSC18 Landrace C|C
269 WSC20 Landrace C|C
270 WSC24 Landrace C|C
271 WSC25 Landrace G|G
272 WSC29 Landrace G|G
273 WSC31 Landrace C|C
274 WSC32 Landrace G|G
275 WSC34 Landrace C|C
276 WSC38 Landrace C|C
277 WSC39 Improved G|G
278 WSC40 Landrace C|C
279 WSC54 Landrace G|G
280 WSC56 Landrace G|G
281 WSC59 Landrace G|G
282 WSC68 Landrace C|C
283 WSC70 Landrace C|C
284 WSC73 Landrace C|C
285 WSC81 Landrace G|G
286 WSC85 Improved G|G
287 WSC91 Landrace G|G
288 WSC93 Landrace G|G
289 WSC98 Landrace G|G

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi558 Sobic.001G000100 downstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p
sbi558 Sobic.001G000200 downstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

Genome Browser