Variation ID : sbi567

Variation Detail



Variation ID sbi567
Type SNP
Position Chr01 7205-7205
Ref /Alleles A/ G
MAF A: 0.396
5' Flank TTTCAGCACCATAGCTGTTCCATTGAACGA
3' Flank TTAACAAAGAAAGGTGTTGCCTTCCAATGG

Individual Alleles

id Sample Id Type Alleles
1 101 Improved G|G
2 103 Improved G|G
3 107 Improved G|G
4 11 Improved G|G
5 110 Improved A|A
6 123 Landrace G|G
7 131 Improved A|A
8 132 Improved G|G
9 135 Improved G|G
10 137 Improved A|A
11 138 Improved A|A
12 14 Improved A|A
13 140 Improved A|A
14 141 Improved G|G
15 144 Improved G|G
16 150 Improved G|G
17 154 Improved G|G
18 159 Landrace G|G
19 16 Improved A|A
20 161 Landrace N|N
21 167 Improved A|A
22 168 Improved A|G
23 170 Improved A|A
24 173 Improved G|G
25 175 Improved G|G
26 176 Improved A|A
27 182 Landrace G|G
28 186 Improved A|A
29 190 Improved A|A
30 192 Improved A|A
31 194 Improved G|G
32 195 Improved G|G
33 197 Improved G|G
34 J22 Landrace G|G
35 J26 Landrace A|A
36 J5 Landrace G|G
37 J50 Landrace A|A
38 2001 Landrace G|G
39 2005 Improved G|G
40 2008 Improved N|N
41 2009 Landrace G|G
42 201 Improved G|G
43 2010 Landrace G|G
44 2016 Improved N|N
45 2019 Improved A|A
46 202 Improved A|A
47 2021 Improved G|G
48 2023 Improved G|G
49 2026 Improved A|A
50 2029 Improved G|G
51 2030 Landrace G|G
52 2031 Landrace A|A
53 2036 Improved A|A
54 2037 Improved G|G
55 2038 Improved G|G
56 2039 Improved G|G
57 204 Improved A|G
58 2042 Improved G|G
59 2043 Improved G|G
60 2048 Improved G|G
61 2049 Improved A|A
62 205 Improved A|A
63 2050 Improved G|G
64 2052 Improved A|A
65 2054 Improved G|G
66 2056 Improved N|N
67 2059 Improved G|G
68 206 Improved A|A
69 2064 Improved G|G
70 2065 Improved A|A
71 2067 Improved G|G
72 2068 Improved N|N
73 2069 Improved G|G
74 2071 Improved G|G
75 2074 Improved G|G
76 2075 Improved A|A
77 2076 Improved A|A
78 2080 Improved G|G
79 2081 Improved A|A
80 2082 Improved G|G
81 2086 Improved G|G
82 2088 Improved A|A
83 260 Wild sorghum G|G
84 261 Improved A|A
85 262 Improved G|G
86 263 Improved A|A
87 286 Improved A|A
88 29 Improved G|G
89 3 Improved A|A
90 302546 S.propinquum G|G
91 31 Improved A|G
92 32 Improved A|A
93 34 Improved G|G
94 346 Landrace A|A
95 348 Wild sorghum G|G
96 353 Wild sorghum G|G
97 355 Wild sorghum G|G
98 357 Wild sorghum G|G
99 364 Wild sorghum G|G
100 367 Landrace A|A
101 s37 S.propinquum G|G
102 s38 S.propinquum G|G
103 370 Landrace G|G
104 377 Wild sorghum G|G
105 392 Wild sorghum G|G
106 394 Wild sorghum G|G
107 40 Improved A|G
108 42 Improved G|G
109 43 Improved A|G
110 45 Improved G|G
111 47 Improved A|A
112 48 Improved G|G
113 51 Improved G|G
114 53 Improved G|G
115 56 Improved A|A
116 61 Improved A|A
117 62 Improved A|A
118 66 Landrace N|N
119 67 Improved G|G
120 68 Improved A|A
121 70 Improved N|N
122 73 Improved A|A
123 75 Improved A|A
124 88 Improved G|G
125 89 Improved G|G
126 91 Improved A|G
127 92 Improved G|G
128 93 Improved G|G
129 94 Improved G|G
130 95 Improved G|G
131 96 Improved G|G
132 97 Improved G|G
133 s1 Improved A|A
134 s36 Wild sorghum G|G
135 s2 Landrace A|A
136 s3 Improved A|A
137 s32 Improved A|A
138 s43 Weedy A|A
139 s40 Landrace G|G
140 s41 Weedy G|G
141 s39 Landrace A|G
142 s42 Landrace G|G
143 s47 Improved A|A
144 s5 Landrace G|G
145 GW102 Landrace A|A
146 GW103 Landrace G|G
147 GW104 Landrace N|N
148 GW105 Landrace G|G
149 GW16 Landrace G|G
150 GW2 Landrace A|A
151 GW34 Landrace G|G
152 GW37 Landrace G|G
153 GW58 Landrace G|G
154 GW59 Landrace G|G
155 GW9 Landrace N|N
156 s4 Weedy G|G
157 s6 Improved A|A
158 s7 Landrace A|G
159 s8 Landrace A|A
160 s9 Landrace A|A
161 J101 Landrace G|G
162 J103 Improved A|A
163 J112 Landrace G|G
164 J113 Improved G|G
165 J129 Improved A|A
166 J130 Improved A|A
167 J136 Improved A|A
168 J152 Improved A|A
169 J2 Landrace A|A
170 J20 Landrace A|A
171 J4 Landrace A|A
172 J42 Landrace A|A
173 J44 Landrace A|A
174 J49 Landrace G|G
175 J52 Landrace A|A
176 J53 Landrace G|G
177 J54 Landrace G|G
178 J57 Landrace A|A
179 J59 Landrace A|A
180 J64 Landrace A|A
181 J66 Landrace A|A
182 J67 Landrace A|A
183 J69 Landrace A|A
184 J87 Landrace G|G
185 J99 Landrace A|A
186 s45 Landrace A|A
187 s11 Improved G|G
188 s10 Improved A|A
189 s46 Improved A|A
190 s12 Improved A|A
191 s13 Landrace A|A
192 MHMD Landrace G|G
193 s14 Improved A|A
194 s15 Improved A|A
195 s34 Weedy G|G
196 s33 Wild sorghum G|G
197 s21 Wild sorghum A|A
198 s16 Wild sorghum G|G
199 s44 Improved A|A
200 s35 Landrace G|G
201 s31 Wild sorghum G|G
202 s17 Improved A|A
203 s18 Improved A|A
204 s20 Improved A|A
205 s19 Improved A|A
206 s22 Landrace G|G
207 s23 Landrace G|G
208 s24 Landrace G|G
209 s25 Landrace A|A
210 s26 Landrace G|G
211 s27 Landrace G|G
212 s28 Landrace A|A
213 s29 Landrace G|G
214 s30 Landrace A|A
215 SL25 Wild sorghum G|G
216 SL105 Wild sorghum G|G
217 SL108 Wild sorghum G|G
218 SL109 Wild sorghum G|G
219 SL12 Wild sorghum G|G
220 SL129 Wild sorghum G|G
221 SL130 Wild sorghum G|G
222 SL135 Wild sorghum A|G
223 SL136 Wild sorghum G|G
224 SL137 Wild sorghum N|N
225 SL138 Wild sorghum G|G
226 SL140 Wild sorghum G|G
227 SL141 Wild sorghum G|G
228 SL19 Wild sorghum G|G
229 SL28 Wild sorghum G|G
230 SL32 Wild sorghum G|G
231 SL35 Wild sorghum G|G
232 SL36 Wild sorghum N|N
233 SL37 Wild sorghum G|G
234 SL39 Wild sorghum A|A
235 SL41 Wild sorghum G|G
236 SL43 Wild sorghum G|G
237 SL47 Wild sorghum G|G
238 SL49 Wild sorghum G|G
239 SL51 Wild sorghum G|G
240 SL53 Wild sorghum G|G
241 SL62 Wild sorghum G|G
242 SL83 Wild sorghum G|G
243 SL97 Landrace G|G
244 s48 Improved A|G
245 Tu13 Wild sorghum N|N
246 Tu14 Wild sorghum G|G
247 Tu30 Wild sorghum G|G
248 Tu5 Wild sorghum G|G
249 WSC5 Landrace N|N
250 WSC15 Landrace G|G
251 WSC19 Landrace A|A
252 WSC30 Landrace G|G
253 WSC52 Landrace G|G
254 WSC6 Landrace G|G
255 WSC61 Landrace A|A
256 WSC71 Improved A|A
257 WSC72 Landrace A|A
258 WSC79 Landrace G|G
259 WSC94 Landrace A|A
260 WSC99 Landrace G|G
261 WSC100 Landrace G|G
262 WSC104 Landrace G|G
263 WSC105 Landrace A|A
264 WSC12 Landrace A|A
265 WSC13 Landrace A|A
266 WSC16 Landrace N|N
267 WSC17 Landrace A|A
268 WSC18 Landrace A|A
269 WSC20 Landrace A|A
270 WSC24 Landrace A|A
271 WSC25 Landrace G|G
272 WSC29 Landrace G|G
273 WSC31 Landrace G|G
274 WSC32 Landrace G|G
275 WSC34 Landrace G|G
276 WSC38 Landrace G|G
277 WSC39 Improved G|G
278 WSC40 Landrace G|G
279 WSC54 Landrace G|G
280 WSC56 Landrace G|G
281 WSC59 Landrace G|G
282 WSC68 Landrace A|A
283 WSC70 Landrace A|A
284 WSC73 Landrace A|A
285 WSC81 Landrace G|G
286 WSC85 Improved G|G
287 WSC91 Landrace G|G
288 WSC93 Landrace G|G
289 WSC98 Landrace G|G

Alleles Distribution

Gene Annotation



Variation ID Gene Consequence Transcript Type cDNA Source/target codon Protein Name protein pos source/target Amino acid
sbi567 Sobic.001G000100 downstream gene variant |MODIFIER Sobic.001G000100.1 mRNA Sobic.001G000100.1.p
sbi567 Sobic.001G000200 downstream gene variant |MODIFIER Sobic.001G000200.1 mRNA Sobic.001G000200.1.p

Genome Browser