Variation Detail
Variation ID | sbi806 |
Type | SNP |
Position | Chr01 9146-9146 |
Ref /Alleles | T/ C or A |
MAF | A: 0.011 |
5' Flank | TCAGGTTGCATTAGTTATCGCTGCTTGCAG |
3' Flank | AAGTTATCCGCCGTTCTTCGGCAAGTTATC |
Individual Alleles
Sample Id | Type | Alleles |
---|---|---|
101 | Improved | T|T |
103 | Improved | T|T |
107 | Improved | T|T |
11 | Improved | T|T |
110 | Improved | T|T |
123 | Landrace | T|T |
131 | Improved | T|T |
132 | Improved | T|T |
135 | Improved | T|T |
137 | Improved | T|T |
138 | Improved | T|T |
14 | Improved | T|T |
140 | Improved | T|T |
141 | Improved | T|T |
144 | Improved | T|T |
150 | Improved | T|T |
154 | Improved | T|T |
159 | Landrace | T|T |
16 | Improved | T|T |
161 | Landrace | T|T |
167 | Improved | T|T |
168 | Improved | T|A |
170 | Improved | T|T |
173 | Improved | T|T |
175 | Improved | T|T |
176 | Improved | T|T |
182 | Landrace | T|T |
186 | Improved | T|T |
190 | Improved | T|T |
192 | Improved | T|T |
194 | Improved | T|T |
195 | Improved | T|T |
197 | Improved | T|T |
J22 | Landrace | T|T |
J26 | Landrace | T|T |
J5 | Landrace | T|T |
J50 | Landrace | T|T |
2001 | Landrace | T|T |
2005 | Improved | T|T |
2008 | Improved | T|T |
2009 | Landrace | T|T |
201 | Improved | T|T |
2010 | Landrace | T|T |
2016 | Improved | T|T |
2019 | Improved | T|T |
202 | Improved | T|T |
2021 | Improved | T|T |
2023 | Improved | T|T |
2026 | Improved | T|T |
2029 | Improved | T|T |
2030 | Landrace | T|T |
2031 | Landrace | T|T |
2036 | Improved | T|T |
2037 | Improved | T|T |
2038 | Improved | N|N |
2039 | Improved | T|T |
204 | Improved | T|T |
2042 | Improved | T|T |
2043 | Improved | T|T |
2048 | Improved | T|T |
2049 | Improved | T|T |
205 | Improved | T|T |
2050 | Improved | T|T |
2052 | Improved | T|T |
2054 | Improved | T|T |
2056 | Improved | T|T |
2059 | Improved | T|T |
206 | Improved | T|T |
2064 | Improved | T|T |
2065 | Improved | T|T |
2067 | Improved | T|T |
2068 | Improved | T|T |
2069 | Improved | T|T |
2071 | Improved | T|T |
2074 | Improved | T|T |
2075 | Improved | T|T |
2076 | Improved | T|T |
2080 | Improved | T|T |
2081 | Improved | T|T |
2082 | Improved | T|T |
2086 | Improved | T|T |
2088 | Improved | T|T |
260 | Wild sorghum | T|T |
261 | Improved | T|T |
262 | Improved | T|T |
263 | Improved | T|T |
286 | Improved | T|T |
29 | Improved | T|T |
3 | Improved | T|T |
302546 | S.propinquum | N|N |
31 | Improved | T|T |
32 | Improved | T|T |
34 | Improved | T|T |
346 | Landrace | T|T |
348 | Wild sorghum | T|T |
353 | Wild sorghum | T|T |
355 | Wild sorghum | T|T |
357 | Wild sorghum | T|T |
364 | Wild sorghum | T|T |
367 | Landrace | T|T |
s37 | S.propinquum | T|T |
s38 | S.propinquum | T|T |
370 | Landrace | T|T |
377 | Wild sorghum | T|T |
392 | Wild sorghum | T|T |
394 | Wild sorghum | T|T |
40 | Improved | T|T |
42 | Improved | T|T |
43 | Improved | T|T |
45 | Improved | T|T |
47 | Improved | T|T |
48 | Improved | T|T |
51 | Improved | T|T |
53 | Improved | T|A |
56 | Improved | T|T |
61 | Improved | T|T |
62 | Improved | T|T |
66 | Landrace | T|T |
67 | Improved | T|T |
68 | Improved | T|T |
70 | Improved | T|T |
73 | Improved | T|T |
75 | Improved | T|T |
88 | Improved | T|A |
89 | Improved | T|T |
91 | Improved | T|A |
92 | Improved | T|C |
93 | Improved | T|C |
94 | Improved | T|T |
95 | Improved | T|T |
96 | Improved | T|T |
97 | Improved | T|T |
s1 | Improved | T|T |
s36 | Wild sorghum | T|T |
s2 | Landrace | T|T |
s3 | Improved | T|T |
s32 | Improved | T|T |
s43 | Weedy | T|T |
s40 | Landrace | T|T |
s41 | Weedy | T|T |
s39 | Landrace | T|T |
s42 | Landrace | T|T |
s47 | Improved | T|T |
s5 | Landrace | T|T |
GW102 | Landrace | T|T |
GW103 | Landrace | T|T |
GW104 | Landrace | T|T |
GW105 | Landrace | T|T |
GW16 | Landrace | T|T |
GW2 | Landrace | T|T |
GW34 | Landrace | T|T |
GW37 | Landrace | T|T |
GW58 | Landrace | T|T |
GW59 | Landrace | T|T |
GW9 | Landrace | T|T |
s4 | Weedy | T|T |
s6 | Improved | T|T |
s7 | Landrace | T|T |
s8 | Landrace | T|T |
s9 | Landrace | T|T |
J101 | Landrace | T|T |
J103 | Improved | T|T |
J112 | Landrace | T|T |
J113 | Improved | T|T |
J129 | Improved | T|T |
J130 | Improved | T|T |
J136 | Improved | T|T |
J152 | Improved | T|T |
J2 | Landrace | T|T |
J20 | Landrace | T|T |
J4 | Landrace | T|T |
J42 | Landrace | T|T |
J44 | Landrace | T|T |
J49 | Landrace | T|T |
J52 | Landrace | T|T |
J53 | Landrace | T|T |
J54 | Landrace | T|T |
J57 | Landrace | T|T |
J59 | Landrace | T|T |
J64 | Landrace | T|T |
J66 | Landrace | T|T |
J67 | Landrace | T|T |
J69 | Landrace | T|T |
J87 | Landrace | T|T |
J99 | Landrace | T|T |
s45 | Landrace | T|T |
s11 | Improved | T|T |
s10 | Improved | T|T |
s46 | Improved | T|T |
s12 | Improved | T|T |
s13 | Landrace | T|T |
MHMD | Landrace | T|T |
s14 | Improved | T|T |
s15 | Improved | T|T |
s34 | Weedy | T|T |
s33 | Wild sorghum | T|T |
s21 | Wild sorghum | T|T |
s16 | Wild sorghum | T|T |
s44 | Improved | T|T |
s35 | Landrace | T|T |
s31 | Wild sorghum | T|T |
s17 | Improved | T|T |
s18 | Improved | T|T |
s20 | Improved | T|T |
s19 | Improved | T|T |
s22 | Landrace | T|T |
s23 | Landrace | T|T |
s24 | Landrace | T|T |
s25 | Landrace | T|T |
s26 | Landrace | T|T |
s27 | Landrace | T|T |
s28 | Landrace | T|T |
s29 | Landrace | T|T |
s30 | Landrace | T|T |
SL25 | Wild sorghum | T|T |
SL105 | Wild sorghum | T|T |
SL108 | Wild sorghum | T|T |
SL109 | Wild sorghum | T|T |
SL12 | Wild sorghum | T|T |
SL129 | Wild sorghum | T|T |
SL130 | Wild sorghum | T|T |
SL135 | Wild sorghum | T|T |
SL136 | Wild sorghum | T|T |
SL137 | Wild sorghum | T|T |
SL138 | Wild sorghum | T|T |
SL140 | Wild sorghum | T|T |
SL141 | Wild sorghum | T|T |
SL19 | Wild sorghum | T|T |
SL28 | Wild sorghum | T|T |
SL32 | Wild sorghum | T|T |
SL35 | Wild sorghum | T|T |
SL36 | Wild sorghum | T|T |
SL37 | Wild sorghum | T|A |
SL39 | Wild sorghum | T|T |
SL41 | Wild sorghum | T|T |
SL43 | Wild sorghum | T|T |
SL47 | Wild sorghum | T|T |
SL49 | Wild sorghum | T|T |
SL51 | Wild sorghum | T|T |
SL53 | Wild sorghum | T|T |
SL62 | Wild sorghum | T|T |
SL83 | Wild sorghum | T|T |
SL97 | Landrace | T|T |
s48 | Improved | T|T |
Tu13 | Wild sorghum | T|T |
Tu14 | Wild sorghum | T|T |
Tu30 | Wild sorghum | T|T |
Tu5 | Wild sorghum | T|A |
WSC5 | Landrace | T|T |
WSC15 | Landrace | T|T |
WSC19 | Landrace | T|T |
WSC30 | Landrace | T|T |
WSC52 | Landrace | T|T |
WSC6 | Landrace | T|T |
WSC61 | Landrace | T|T |
WSC71 | Improved | T|T |
WSC72 | Landrace | T|T |
WSC79 | Landrace | T|T |
WSC94 | Landrace | T|T |
WSC99 | Landrace | T|T |
WSC100 | Landrace | T|T |
WSC104 | Landrace | T|T |
WSC105 | Landrace | T|T |
WSC12 | Landrace | T|T |
WSC13 | Landrace | T|T |
WSC16 | Landrace | T|T |
WSC17 | Landrace | N|N |
WSC18 | Landrace | T|T |
WSC20 | Landrace | T|T |
WSC24 | Landrace | T|T |
WSC25 | Landrace | T|T |
WSC29 | Landrace | T|T |
WSC31 | Landrace | T|T |
WSC32 | Landrace | T|T |
WSC34 | Landrace | N|N |
WSC38 | Landrace | T|T |
WSC39 | Improved | T|T |
WSC40 | Landrace | T|T |
WSC54 | Landrace | T|T |
WSC56 | Landrace | T|T |
WSC59 | Landrace | T|T |
WSC68 | Landrace | T|T |
WSC70 | Landrace | T|T |
WSC73 | Landrace | T|T |
WSC81 | Landrace | T|T |
WSC85 | Improved | T|T |
WSC91 | Landrace | T|T |
WSC93 | Landrace | T|T |
WSC98 | Landrace | T|T |
Alleles Distribution
Gene Annotation
Variation ID | Gene | Consequence | Transcript | Type | cDNA | Source/target codon | Protein Name | protein pos | source/target Amino acid |
sbi806 | Sobic.001G000200 | downstream gene variant |MODIFIER | Sobic.001G000200.1 | mRNA | Sobic.001G000200.1.p | ||||
sbi806 | Sobic.001G000200 | downstream gene variant |MODIFIER | Sobic.001G000200.1 | mRNA | Sobic.001G000200.1.p |
Genome Browser