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Assemblies and annotations

Species	Organism	Assembly	Cultivar	File	Release Date	Package	FileSize

Variations Data

Species	Description	Reference	File	File Size
cassava	Variant profiles of 573 cassavas	cassava_AM560_JGI_v8	573_cassava.snp.vcf.gz	188G
cassava	Variant profiles of 573 cassavas	cassava_AM560_JGI_v8	573_cassava.indel.vcf.gz	39G
rubber tree	Variant profiles of 336 rubber trees	rubber_tree_reyan8-79	336_rubbertree.snp.vcf.gz	8.8G
rubber tree	Variant profiles of 336 rubber trees	rubber_tree_reyan8-79	336_rubbertree.indel.vcf.gz	450M
pineapple	Variant profiles of 87 pineapples	pineapple_F153_v2	87_pineapple.snp.vcf.gz	13G
pineapple	Variant profiles of 87 pineapples	pineapple_F153_v2	87_pineapple.indel.vcf.gz	2.1G
mango	Variant profiles of 48 mangoes	mango_Alphonso	48_mango.snp.vcf.gz	13G
mango	Variant profiles of 48 mangoes	mango_Alphonso	48_mango.indel.vcf.gz	1.8G
banana	Variant profiles of 230 bananas	banana_DH-Pahang	230_banana.snp.vcf.gz	82G
banana	Variant profiles of 230 bananas	banana_DH-Pahang	230_banana.indel.vcf.gz	13G
cocoa	Variant profiles of 207 cocoas	cacao_B97-61/B2	207_cocoa.snp.vcf.gz	19G
cocoa	Variant profiles of 207 cocoas	cacao_B97-61/B2	207_cocoa.indel.vcf.gz	2.4G
coffee	Variant profiles of 93 coffees	coffea_canephora	93_coffee.snp.vcf.gz	17G
coffee	Variant profiles of 93 coffees	coffea_canephora	93_coffee.indel.vcf.gz	3.1G
litchi	Variant profiles of 72 litchis	lychee_FZX	72_litchi.snp.vcf.gz	12G
litchi	Variant profiles of 72 litchis	lychee_FZX	72_litchi.indel.vcf.gz	1.8G
longan	Variant profiles of 95 longans	longan_shixia	95_longan.snp.vcf.gz	17G
longan	Variant profiles of 95 longans	longan_shixia	95_longan.indel.vcf.gz	2.3G
oilpalm	Variant profiles of 98 oilpalms	oil_palm_African	98_oilpalm.snp.vcf.gz	38G
oilpalm	Variant profiles of 98 oilpalms	oil_palm_African	98_oilpalm.indel.vcf.gz	3.2G

Expressions Data

Species	Description	Reference
cassava	13 expression profiles of cassava	cassava_AM560_JGI_v8
pineapple	8 expression profiles of pineapple	pineapple_F153_v2
mango	4 expression profiles of mango	mango_Alphonso
rubber tree	6 expression profiles of rubber tree	rubber_tree_reyan8-79
sugarcane	6 expression profiles of sugarcane	sugarcane_LApurple;sugarcane_AP85-441
banana	13 expression profiles of banana	banana_DH-Pahang
cocoa	4 expression profiles of cocoa	cacao_B97-61/B2
coconut	1 expression profiles of coconut	coconut_palm_Tall
coffee	9 expression profiles of coffee	coffea_canephora
litchi	10 expression profiles of litchi	lychee_FZX
longan	3 expression profiles of longan	longan_shixia
oilpalm	10 expression profiles of oilpalm	oil_palm_African
vanilla	1 expression profiles of vanilla	vanilla_Daphna_haplotypeA

Cultivars Data

Species	Description	File	File Size
cassava	6074 collections of cassava cultivars from CIAT	CIAT.gz	1.2M
cassava	4359 collections of cassava cultivars from IITA	IITA.tar.gz	2.3M
areca	69 collections of areca cultivars from GRIN	Areca.gz	14K
banana	208 collections of banana cultivars from GRIN	Banana.gz	39K
cocoa	208 collections of cocoa cultivars from GRIN	Cocoa.gz	17K
coconut	60 collections of coconut cultivars from GRIN	Coconut.gz	6K
coffee	500 collections of coffee cultivars from GRIN	Coffee.gz	33K
litchi	91 collections of litchi cultivars from GRIN	Litchi.gz	12K
longan	71 collections of longan cultivars from GRIN	Longan.gz	8K
mango	310 collections of mango cultivars from GRIN	Mango.gz	26K
oilpalm	91 collections of oilpalm cultivars from GRIN	Oilpalm.gz	8K
pepper	60 collections of pepper cultivars from GRIN	Pepper.gz	7.5K
pineapple	328 collections of pineapple cultivars from GRIN	Pineapple.gz	41K
rubber tree	110 collections of rubber tree cultivars from GRIN	Rubber tree.gz	9K
sugarcane	682 collections of sugarcane cultivars from GRIN	Sugarcane.gz	51K
vanilla	163 collections of vanilla cultivars from GRIN	Vanilla.gz	10K

Note: Data resources related to the genomes cassava_A4047, cassava_AM560_ITBB and cassava_W14 have not been released yet. They will be published as soon as they become publicly available.