TCOD gene information

Detail information of 108660416

Position	Chr5:28961681-28968224
Length	6544bp
Strand	Reverse(-)
Synonym	LOC108660416
Nr	XP_017977388.1
Uniprot	A0A061EY06
Pfam	PF07035
Interpro	IPR009755
GO	-
KEGG	-
Function from GFF	uncharacterized protein LOC108660416 isoform X1
Function from eggNOG-mapper	Colon cancer-associated protein Mic1-like

Genome	GeneSeq	mRNASeq	cdsSeq	proteinSeq
cacao_B97-61/B2	108660416	mrna_XM_018121899.1_19120	cds_XP_017977388.1_16836	XP_017977388.1
cacao_B97-61/B2	108660416	mrna_XM_018121900.1_19119	cds_XP_017977389.1_16837	XP_017977389.1

Orthologous gene graph
Homologous gene list

Showing 1 to 10 of 30 entries

Search:

Query Gene	Assembly for query gene	Orthologous gene	Paralogous gene	Assembly for homologous gene	Species for homologous gene
108660416	cacao_B97-61/B2	Pn6.1290 Pn8.1519	-	pepper_reyin	pepper
108660416	cacao_B97-61/B2	Manes.09G038300	-	cassava_AM560_JGI_v8	cassava
108660416	cacao_B97-61/B2	VANPL_A_00013g008140	-	vanilla_CR00040_haplotypeA	vanilla
108660416	cacao_B97-61/B2	Manin00g000300	-	mango_Tommy-Atkins	mango
108660416	cacao_B97-61/B2	Vpl13Ag24784	-	vanilla_Daphna_haplotypeA	vanilla
108660416	cacao_B97-61/B2	GWHGBDNI017316	-	longan_JDB	longan
108660416	cacao_B97-61/B2	Aco003942	-	pineapple_F153_v2	pineapple
108660416	cacao_B97-61/B2	Dil.14g012470.1	-	longan_shixia	longan
108660416	cacao_B97-61/B2	123221403	-	mango_Alphonso	mango
108660416	cacao_B97-61/B2	GH714_031376	-	rubber_tree_GT1	rubber tree

Show entries

Showing 1 to 10 of 1,195 entries

Search:

VarID	GeneID	Consequence Type \|Effect	Allele Change	Residue Change	TranscriptID	ProteinID
tca14331138	108660416	downstream gene variant \|MODIFIER	-	-	XM_018121900.1	XP_017977389.1
tca14331138	108660416	downstream gene variant \|MODIFIER	-	-	XM_018121899.1	XP_017977388.1
tca14331139	108660416	downstream gene variant \|MODIFIER	-	-	XM_018121900.1	XP_017977389.1
tca14331139	108660416	downstream gene variant \|MODIFIER	-	-	XM_018121899.1	XP_017977388.1
tca14331140	108660416	downstream gene variant \|MODIFIER	-	-	XM_018121900.1	XP_017977389.1
tca14331140	108660416	downstream gene variant \|MODIFIER	-	-	XM_018121899.1	XP_017977388.1
tca14331141	108660416	downstream gene variant \|MODIFIER	-	-	XM_018121900.1	XP_017977389.1
tca14331141	108660416	downstream gene variant \|MODIFIER	-	-	XM_018121899.1	XP_017977388.1
tca14331142	108660416	downstream gene variant \|MODIFIER	-	-	XM_018121900.1	XP_017977389.1
tca14331142	108660416	downstream gene variant \|MODIFIER	-	-	XM_018121899.1	XP_017977388.1

Show entries

Expression level
Differential Expression

ProjectID	BioprojectID	#Samples	Organism	Description	Category
Loading...

Showing 0 to 0 of 0 entries

Search:

Up/Down	logFC	P-value	Adj-value	AveExpr	ProjectID	BioprojectID	Category	Comparison	Link to DEG
No data available in table

Show entries