TCOD gene information

Detail information of 108660471

Position	Chr5:32438374-32440685
Length	2312bp
Strand	Reverse(-)
Synonym	LOC108660471
Nr	XP_017976519.1
Uniprot	A0A061EYN8
Pfam	PF00931 PF13855 PF18052
Interpro	IPR002182 IPR001611 IPR041118
GO	-
KEGG	-
Function from GFF	putative disease resistance protein RGA1
Function from eggNOG-mapper	Belongs to the disease resistance NB-LRR family

Genome	GeneSeq	mRNASeq	cdsSeq	proteinSeq
cacao_B97-61/B2	108660471	mrna_XM_018121030.1_19590	cds_XP_017976519.1_17262	XP_017976519.1

Orthologous gene graph
Homologous gene list

Showing 1 to 10 of 24 entries

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Query Gene	Assembly for query gene	Orthologous gene	Paralogous gene	Assembly for homologous gene	Species for homologous gene
108660471	cacao_B97-61/B2	-	Manes.09G019701 Manes.09G019801 Manes.09G019900 Manes.09G022500 Manes.09G022566 Manes.09G022700 Manes.09G022780 Manes.09G022810 Manes.09G022840 Manes.09G022900 Manes.09G022950 Manes.09G023000 Manes.09G023200 Manes.09G023300 Manes.09G023800 Manes.09G023900 Manes.09G024032 Manes.09G024786 Manes.09G024872 Manes.09G024959 Manes.09G025044 Manes.09G025130 Manes.09G025302 Manes.09G025388 Manes.09G025400 Manes.09G025560 Manes.09G025646 Manes.09G025732 Manes.09G025800 Manes.09G025861 Manes.09G025904 Manes.09G026000 Manes.12G091600	cassava_AM560_JGI_v8	cassava
108660471	cacao_B97-61/B2	Manin03g003640 Manin13g010750 Manin13g010760 Manin13g010790 Manin13g010920 Manin13g010990	Manin02g004010 Manin12g000540 Manin12g000550 Manin12g000560 Manin12g000570 Manin12g000670 Manin12g000680 Manin12g005100 Manin12g005110 Manin12g005120 Manin13g010810 Manin13g010970 Manin18g012140	mango_Tommy-Atkins	mango
108660471	cacao_B97-61/B2	GWHGBDNI006623	GWHGBDNI006627 GWHGBDNI006629 GWHGBDNI006631 GWHGBDNI006632 GWHGBDNI006633 GWHGBDNI006634 GWHGBDNI006635 GWHGBDNI006639 GWHGBDNI006640 GWHGBDNI006641 GWHGBDNI006642 GWHGBDNI006643 GWHGBDNI006644 GWHGBDNI006645 GWHGBDNI006646 GWHGBDNI006647 GWHGBDNI006648	longan_JDB	longan
108660471	cacao_B97-61/B2	-	Aco023293 Aco027415	pineapple_F153_v2	pineapple
108660471	cacao_B97-61/B2	Dil.02g008860.1	Dil.02g018480.1 Dil.08g011210.1 Dil.08g011270.1 Dil.08g011350.1 Dil.08g011380.1 Dil.08g011390.1 Dil.08g011400.1 Dil.08g011410.1 Dil.08g011420.1 Dil.08g011440.1 Dil.08g011480.1	longan_shixia	longan
108660471	cacao_B97-61/B2	123206311 123206313 123206321 123227497 123227509 123228412 123228414	123195448 123195449 123195777 123196549 123196550 123206323 123219755 123219897 123220280 123221332 123221356 123221525 123226795	mango_Alphonso	mango
108660471	cacao_B97-61/B2	-	GH714_015800 GH714_032747 GH714_032755 GH714_032762 GH714_032768 GH714_032776 GH714_032777 GH714_032803 GH714_032804 GH714_032812 GH714_032837 GH714_032952 GH714_032957 GH714_032980 GH714_033054 GH714_033078 GH714_033094 GH714_033105 GH714_033115 GH714_033123 GH714_033146 GH714_033168 GH714_033223 GH714_033265 GH714_033384 GH714_033394 GH714_033401 GH714_033403 GH714_033434 GH714_033443 GH714_033450 GH714_033580 GH714_033582 GH714_033876 GH714_033882 GH714_033943 GH714_033953 GH714_033972 GH714_033982 GH714_034025 GH714_034035 GH714_034042 GH714_034063 GH714_034069 GH714_034099 GH714_034149 GH714_034170 GH714_034217 GH714_034226 GH714_034229 GH714_034232 GH714_034259 GH714_034273 GH714_034466 GH714_034496 GH714_036306 GH714_043718 GH714_043719	rubber_tree_GT1	rubber tree
108660471	cacao_B97-61/B2	18599582	18598922 18599567 18599568 18599570 18599571 18599573 18599574 18599575 18599576 18599577 18599578 18599579 18599580 18599581 18599583 18599584 18599895 18599897 18599898 18599899 18599900 18599902 18611943	cacao_Matina1-6	cocoa
108660471	cacao_B97-61/B2	-	Ms09t255740	banana_ITC926	banana
108660471	cacao_B97-61/B2	GWHGABLA007818 GWHGABLA007821 GWHGABLA007826 GWHGABLA007827 GWHGABLA007829 GWHGABLA007834 GWHGABLA007859	GWHGABLA005468 GWHGABLA005469 GWHGABLA005470 GWHGABLA005471 GWHGABLA015780 GWHGABLA015785 GWHGABLA019096 GWHGABLA019591 GWHGABLA019592 GWHGABLA019593 GWHGABLA019594 GWHGABLA019595 GWHGABLA019597	mango_Hongxiangya	mango

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VarID	GeneID	Consequence Type \|Effect	Allele Change	Residue Change	TranscriptID	ProteinID
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Expression level
Differential Expression

ProjectID	BioprojectID	#Samples	Organism	Description	Category
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Up/Down	logFC	P-value	Adj-value	AveExpr	ProjectID	BioprojectID	Category	Comparison	Link to DEG
up	3.4650707480955	0.00081013456720933	0.0102479186529511	-3.34142241866595	TCODP0076	PRJNA613342	Biochemical trait;	GW VS GF
up	2.22322838054424	0.0461763880363493	0.152447025057159	-2.88437754831562	TCODP0076	PRJNA613342	Biochemical trait;	GW VS PF

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Chr5

10M

15M

20M

25M

30M

35M

2.31Kbp

32,437,600

32,438,000

32,438,400

32,438,800

32,439,200

32,439,600

32,440,000

32,440,400

32,440,800

32,441,200

32,441,600

32,442,000

Chr5

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Detail information of 108660471

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