1. TCOD
  2. Assembly
  3. pineapple_F153_v1

Detail information of pineapple_F153_v1

Organism name:   Ananas comosus

Cultivar:   F153

Bioproject:   PRJNA305080

Submitter:   Fujian Agriculture and Forestry University

Year:   2016

Assembly level:   Chromosome

Sequencing technology   Illumina Hiseq;PacBio;454

Genome coverage   400x

Total sequence length:   382,055,938 bp

chromosomes and scaffolds:   25 chromosomes and 3104 scaffolds

Scaffold N50:   11,759,267 bp

median GC content(%):   38.34

Ming R, VanBuren R, Wai CM, et al. The pineapple genome and the evolution of CAM photosynthesis. Nat Genet. 2015;47(12):1435-1442. doi:10.1038/ng.3435 [OpenLBID: OLB-PM-26523774]

Chrom Size(Mb) GC% Gene
Chr1 24.88 37.49 1,731
Chr2 17.33 37.07 1,245
Chr3 16.78 37.04 1,234
Chr4 15.58 36.96 1,272
Chr5 15.02 36.91 1,260
Chr6 14.75 37.30 1,033
Chr7 14.73 37.42 1,158
Chr8 13.97 37.04 1,071
Chr9 13.84 36.89 1,091
Chr10 13.11 36.91 862
Chr11 13.10 37.14 886
Chr12 12.61 36.98 1,022
Chr13 11.76 37.41 761
Chr14 11.71 37.00 896
Chr15 11.37 37.03 899
Chr16 11.17 37.46 710
Chr17 11.16 37.08 869
Chr18 10.91 37.47 816
Chr19 10.82 37.30 697
Chr20 10.79 37.07 711
Chr21 10.65 37.02 717
Chr22 10.40 37.34 760
Chr23 7.98 37.74 634
Chr24 7.68 37.57 377
Chr25 3.74 36.38 455
chloroplast 0.16 37.37 132
Unplace 66.05 39.97 2,459

tuli
chr1chr2chr3chr4chr5chr6chr7chr8chr9chr10chr11chr12chr13chr14chr15chr16chr17chr18chr19chr20chr21chr22chr23chr24chr25