1. TCOD
  2. Assembly
  3. cassava_SC205

Detail information of cassava_SC205

Organism name:   Manihot esculenta

Cultivar:   SC205

Bioproject:   PRJNA578024

Submitter:   ITBB

Year:   2020

Assembly level:   Chromosome

Sequencing technology   PacBio Sequel; PacBio RSII

Genome coverage   90x

Total sequence length:   710,028,560 bp

chromosomes and scaffolds:   17 chromosomes and 1272 scaffolds

Scaffold N50:   34,450,595 bp

median GC content(%):   37.64

Hu W, Ji C, Shi H, et al. Allele-defined genome reveals biallelic differentiation during cassava evolution. Mol Plant. 2021;14(6):851-854. doi:10.1016/j.molp.2021.04.009 [OpenLBID: OLB-PM-33866024]

Chrom Size(Mb) GC% Gene
Chr1 43.20 37.40 -
Chr2 37.50 37.32 -
Chr3 33.67 36.88 -
Chr4 38.97 37.25 -
Chr5 30.51 36.77 -
Chr6 31.39 37.41 -
Chr7 36.93 37.45 -
Chr8 40.09 38.28 -
Chr9 35.49 37.10 -
Chr10 31.81 37.05 -
Chr11 31.55 36.62 -
Chr12 39.52 38.05 -
Chr13 38.70 38.30 -
Chr14 31.23 37.24 -
Chr15 32.20 37.78 -
Chr16 38.46 38.09 -
Chr17 34.45 39.05 -
Chr18 33.49 38.40 -
Unplace 70.87 37.98 -

tuli
chr1chr2chr3chr4chr5chr6chr7chr8chr9chr10chr11chr12chr13chr14chr15chr16chr17chr18