1. TCOD
  2. Assembly
  3. sugarcane_LApurple

Detail information of sugarcane_LApurple

Organism name:   Saccharum officinarum

Cultivar:   LApurple

Bioproject:   PRJCA005569

Submitter:   Fujian Agriculture and Forestry University

Year:   2021

Assembly level:   Chromosome

Sequencing technology   PacBio

Genome coverage   66x

Total sequence length:   6,804,976,965 bp

chromosomes and scaffolds:   80 chromosomes and 9537 scaffolds

Scaffold N50:   82,862,972 bp

median GC content(%):   44.58

Chrom Size(Mb) GC% Gene
Chr01A 149.50 44.60 2,404
Chr01B 147.09 44.74 2,353
Chr01C 134.88 44.83 2,509
Chr01D 121.40 44.68 2,570
Chr01E 120.60 44.64 2,430
Chr01F 118.54 44.26 1,565
Chr01G 116.90 44.62 2,092
Chr01H 100.71 45.04 2,143
Chr02A 123.14 44.54 2,347
Chr02B 123.08 44.25 1,655
Chr02C 122.41 44.44 1,997
Chr02D 115.23 44.57 2,111
Chr02E 114.53 44.58 2,103
Chr02F 107.19 44.51 1,955
Chr02G 62.78 44.63 1,265
Chr02H 45.20 45.27 1,078
Chr03A 104.87 44.79 2,207
Chr03B 101.18 44.94 2,046
Chr03C 94.98 44.82 1,955
Chr03D 91.83 44.52 1,863
Chr03E 87.57 44.61 1,699
Chr03F 85.72 44.67 1,766
Chr03G 82.54 44.90 1,714
Chr03H 56.14 44.20 858
Chr04A 114.71 44.62 1,899
Chr04B 97.54 44.38 1,769
Chr04C 96.80 44.61 1,808
Chr04D 88.45 44.10 1,450
Chr04E 87.24 44.77 1,719
Chr04F 82.86 44.20 1,122
Chr04G 76.43 44.16 1,495
Chr04H 65.65 44.81 1,491
Chr05A 101.32 43.75 1,307
Chr05B 96.29 43.85 1,203
Chr05C 91.94 43.70 1,278
Chr05D 82.73 43.85 1,157
Chr05E 75.12 43.80 1,103
Chr05F 74.38 43.70 1,059
Chr05G 58.43 44.12 962
Chr05H 51.92 43.97 872
Chr06A 89.87 44.68 1,406
Chr06B 81.08 44.79 1,335
Chr06C 75.98 44.61 1,311
Chr06D 64.19 44.78 1,401
Chr06E 52.72 44.24 882
Chr06F 52.43 45.23 1,076
Chr06G 47.55 45.24 1,103
Chr06H 41.31 45.08 865
Chr07A 89.65 44.09 1,375
Chr07B 80.62 44.22 1,100
Chr07C 69.92 44.61 1,238
Chr07D 67.77 44.35 1,134
Chr07E 66.92 44.06 789
Chr07F 62.12 44.46 1,141
Chr07G 61.15 44.33 938
Chr07H 53.72 44.00 724
Chr08A 66.47 44.19 1,064
Chr08B 65.33 43.95 962
Chr08C 64.60 44.08 832
Chr08D 60.06 44.16 809
Chr08E 58.11 43.99 793
Chr08F 57.78 44.14 838
Chr08G 55.50 44.18 889
Chr08H 54.12 44.28 927
Chr09A 88.90 44.21 1,124
Chr09B 81.65 44.37 1,405
Chr09C 80.50 44.64 1,395
Chr09D 76.02 44.25 1,129
Chr09E 72.69 44.54 1,225
Chr09F 68.86 44.32 957
Chr09G 62.27 44.45 1,120
Chr09H 55.40 44.21 933
Chr10A 76.41 44.40 1,202
Chr10B 70.32 44.62 1,331
Chr10C 69.25 44.71 1,302
Chr10D 68.31 44.67 1,251
Chr10E 62.26 44.80 1,151
Chr10F 61.46 44.44 944
Chr10G 48.12 44.19 709
Chr10H 45.61 44.05 583
Unplace 308.12 44.82 6,685

tuli
chr1chr2chr3chr4chr5chr6chr7chr8chr9chr10chr11chr12chr13chr14chr15chr16chr17chr18chr19chr20chr21chr22chr23chr24chr25chr26chr27chr28chr29chr30chr31chr32chr33chr34chr35chr36chr37chr38chr39chr40chr41chr42chr43chr44chr45chr46chr47chr48chr49chr50chr51chr52chr53chr54chr55chr56chr57chr58chr59chr60chr61chr62chr63chr64chr65chr66chr67chr68chr69chr70chr71chr72chr73chr74chr75chr76chr77chr78chr79chr80