1. TCOD
  2. Assembly
  3. areca_palm_Reyan

Detail information of areca_palm_Reyan

Organism name:   Areca catechu

Cultivar:   Reyan#1

Bioproject:   CNP0000517

Submitter:   Coconut Research Institute

Year:   2021

Assembly level:   Chromosome

Sequencing technology   Illumina; PacBio; Hi-C

Genome coverage   240×

Total sequence length:   2,513,067,666 bp

chromosomes and scaffolds:   16 chromosomes and 4307 scaffolds

Scaffold N50:   171,974,900 bp

median GC content(%):   41.14

Yang Y, Huang L, Xu C, et al. Chromosome-scale genome assembly of areca palm (Areca catechu). Mol Ecol Resour. 2021;21(7):2504-2519. doi:10.1111/1755-0998.13446 [OpenLBID: OLB-PM-34133844]

Chrom Size(Mb) GC% Gene
Chr1 171.97 41.05 2,017
Chr2 177.28 41.01 1,668
Chr3 178.67 41.27 2,022
Chr4 135.12 40.59 1,579
Chr5 123.02 40.77 1,408
Chr6 96.29 41.50 1,188
Chr7 92.00 41.09 990
Chr8 121.94 40.88 1,862
Chr9 142.85 41.18 2,460
Chr10 194.81 41.34 2,982
Chr11 161.19 40.98 2,437
Chr12 123.03 41.20 1,501
Chr13 151.44 41.16 1,864
Chr14 181.88 40.97 2,016
Chr15 204.20 41.61 3,081
Chr16 198.96 41.04 2,104
Unplace 58.42 41.99 390

tuli
chr1chr2chr3chr4chr5chr6chr7chr8chr9chr10chr11chr12chr13chr14chr15chr16