1. TCOD
  2. Assembly
  3. pineapple_F153_v2

Detail information of pineapple_F153_v2

Organism name:   Ananas comosus

Cultivar:   F153

Bioproject:   PRJEB33121

Submitter:   Fujian Agriculture and Forestry University

Year:   2020

Assembly level:   Chromosome

Sequencing technology   Illumina HiSeq X10;PacBio RSII;Hi-C

Genome coverage   100x

Total sequence length:   315,839,004 bp

chromosomes and scaffolds:   25 chromosomes and 0 scaffolds

Scaffold N50:   13,096,602 bp

median GC content(%):   37.72

Chen LY, VanBuren R, Paris M, et al. The bracteatus pineapple genome and domestication of clonally propagated crops. Nat Genet. 2019;51(10):1549-1558. doi:10.1038/s41588-019-0506-8 [OpenLBID: OLB-PM-31570895]

Chrom Size(Mb) GC% Gene
Chr1 10.53 38.01 806
Chr2 14.35 37.10 1,236
Chr3 17.33 37.07 1,365
Chr4 16.78 37.04 1,441
Chr5 15.58 36.96 1,516
Chr6 15.02 36.91 1,363
Chr7 14.75 37.30 1,201
Chr8 14.73 37.42 1,330
Chr9 13.97 37.04 1,248
Chr10 13.84 36.89 1,253
Chr11 13.11 36.91 997
Chr12 13.10 37.14 1,014
Chr13 12.61 36.98 1,148
Chr14 11.76 37.41 895
Chr15 11.71 37.00 1,011
Chr16 11.37 37.04 990
Chr17 11.17 37.46 839
Chr18 11.16 37.08 951
Chr19 10.91 37.47 946
Chr20 10.82 37.30 849
Chr21 10.79 37.06 893
Chr22 10.65 37.02 881
Chr23 10.40 37.34 871
Chr24 7.98 37.74 709
Chr25 11.42 37.18 977

tuli
chr1chr2chr3chr4chr5chr6chr7chr8chr9chr10chr11chr12chr13chr14chr15chr16chr17chr18chr19chr20chr21chr22chr23chr24chr25