1. TCOD
  2. Assembly
  3. cacao_B97-61/B2

Detail information of cacao_B97-61/B2

Organism name:   Theobroma cacao

Cultivar:   B97-61/B2

Bioproject:   PRJEB14326

Submitter:   CIRAD

Year:   2016

Assembly level:   Chromosome

Sequencing technology   Illumina;PacBio

Genome coverage   52x

Total sequence length:   324,879,930 bp

chromosomes and scaffolds:   11 chromosomes and 420 scaffolds

Scaffold N50:   36,364,294 bp

median GC content(%):   32.15

Argout X, Martin G, Droc G, et al. The cacao Criollo genome v2.0: an improved version of the genome for genetic and functional genomic studies. BMC Genomics. 2017;18(1):730. Published 2017 Sep 15. doi:10.1186/s12864-017-4120-9 [OpenLBID: OLB-PM-28915793]

Chrom Size(Mb) GC% Gene
Chr1 37.323695 32.9555 3,510
Chr2 41.23644 32.4768 3,144
Chr3 36.364294 32.227 2,730
Chr4 31.929104 32.6103 2,594
Chr5 39.371879 32.0122 2,764
Chr6 26.303134999999997 31.6069 2,024
Chr7 21.614486 32.3573 1,545
Chr8 19.593398 32.2548 1,685
Chr9 38.630433 31.8955 3,084
Chr10 21.822658 32.1433 1,481
chloroplast 0.160619 36.8742 126
Unplace 10.529789000000001 28.3904 270

tuli