1. TCOD
  2. Assembly
  3. coconut_palm_Tall

Detail information of coconut_palm_Tall

Organism name:   Cocos nucifera

Cultivar:   Hainan Tall

Bioproject:   PRJNA374600

Submitter:   Coconut Research Institute

Year:   2019

Assembly level:   Chromosome

Sequencing technology   Illumina HiSeq2000

Genome coverage   173.2x

Total sequence length:   2,202,455,121 bp

chromosomes and scaffolds:   16 chromosomes and 113637 scaffolds

Scaffold N50:   1,217,559 bp

median GC content(%):   36.36

Yang Y, Bocs S, Fan H, et al. Coconut genome assembly enables evolutionary analysis of palms and highlights signaling pathways involved in salt tolerance. Commun Biol. 2021;4(1):105. Published 2021 Jan 22. doi:10.1038/s42003-020-01593-x [OpenLBID: OLB-PM-33483627]

Chrom Size(Mb) GC% Gene
Chr1 119.963539 36.8576 2,277
Chr2 85.636561 36.8321 1,997
Chr3 82.374452 36.8836 1,705
Chr4 66.811639 36.9266 1,610
Chr5 57.731913999999996 36.475 1,104
Chr6 81.752308 37.2908 2,095
Chr7 68.107953 36.864 1,583
Chr8 58.726133000000004 36.8406 1,214
Chr9 59.467968 36.568 1,026
Chr10 57.291197999999994 36.7438 1,066
Chr11 62.458273 36.8427 1,379
Chr12 40.247383 36.9669 868
Chr13 61.684062 36.6487 847
Chr14 56.264922 36.8951 1,309
Chr15 23.504088 36.595 646
Chr16 38.224781 37.1946 867
Unplace 1182.2079469999999 35.9402 6,423

tuli