1. TCOD
  2. Assembly
  3. rubber_tree_GT1

Detail information of rubber_tree_GT1

Organism name:   Hevea brasiliensis

Cultivar:   GT1

Bioproject:   PRJNA587314

Submitter:   South China Agricultural University

Year:   2020

Assembly level:   Chromosome

Sequencing technology   PacBio RS

Genome coverage   100x

Total sequence length:   1,473,451,759 bp

chromosomes and scaffolds:   18 chromosomes and 582 scaffolds

Scaffold N50:   87,430,961 bp

median GC content(%):   33.87

Liu J, Shi C, Shi CC, et al. The Chromosome-Based Rubber Tree Genome Provides New Insights into Spurge Genome Evolution and Rubber Biosynthesis. Mol Plant. 2020;13(2):336-350. doi:10.1016/j.molp.2019.10.017 [OpenLBID: OLB-PM-31838037]

Chrom Size(Mb) GC% Gene
Chr1 74.039119 33.8172 2,030
Chr2 61.756901 33.8959 1,942
Chr3 90.726189 34.0904 2,114
Chr4 103.69289 33.6305 3,014
Chr5 84.022344 34.2396 1,940
Chr6 46.032858 33.2993 1,210
Chr7 100.633993 33.6259 3,257
Chr8 99.80478699999999 34.0534 2,596
Chr9 103.98211 33.8117 3,457
Chr10 100.80436999999999 33.0602 3,328
Chr11 87.430961 33.7484 2,370
Chr12 82.64181699999999 34.005 2,030
Chr13 67.209439 34.2171 1,321
Chr14 81.99397599999999 33.5368 3,933
Chr15 89.25097500000001 34.0668 3,991
Chr16 83.331814 33.7144 2,263
Chr17 35.547748 33.9238 655
Chr18 49.052873 33.8863 1,026
Unplace 31.496595000000003 35.242 1,669

tuli