1. TCOD
  2. Assembly
  3. oil_palm_African

Detail information of oil_palm_African

Organism name:   Elaeis guineensis

Cultivar:   African oil palm

Bioproject:   PRJNA192219

Submitter:   Orion Genomics

Year:   2013

Assembly level:   Chromosome

Sequencing technology   454

Genome coverage   16x

Total sequence length:   1,535,178,229 bp

chromosomes and scaffolds:   17 chromosomes and 40332 scaffolds

Scaffold N50:   1,268,079 bp

median GC content(%):   25.62

Singh R, Ong-Abdullah M, Low ET, et al. Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds. Nature. 2013;500(7462):335-339. doi:10.1038/nature12309 [OpenLBID: OLB-PM-23883927]

Chrom Size(Mb) GC% Gene
Chr1 68.435666 29.5751 2,769
Chr2 65.558141 29.7146 2,481
Chr3 60.060032 28.7247 2,155
Chr4 57.251647 27.9356 1,802
Chr5 51.955538999999995 28.9858 1,975
Chr6 44.357769 26.8179 1,366
Chr7 43.454766000000006 28.4125 1,460
Chr8 40.195398999999995 28.5166 1,481
Chr9 38.056896 26.408 1,133
Chr10 31.890735 30.0105 1,290
Chr11 30.06891 27.7123 1,012
Chr12 28.800575000000002 30.2619 1,184
Chr13 27.81747 28.939 997
Chr14 24.379742999999998 29.5338 981
Chr15 24.314465 28.9639 899
Chr16 21.371083 30.4503 842
chloroplast 0.156973 37.4045 137
Unplace 877.0524200000001 23.2707 8,133

tuli