1. TCOD
  2. Assembly
  3. vanilla_Daphna_haplotypeA

Detail information of vanilla_Daphna_haplotypeA

Organism name:   Vanilla planifolia

Cultivar:   Daphna

Bioproject:   PRJNA633886

Submitter:   Elo Life Systems

Year:   2020

Assembly level:   Chromosome

Sequencing technology   Oxford Nanopore; Illumina

Genome coverage   50x

Total sequence length:   736,752,966 bp

chromosomes and scaffolds:   14 chromosomes and 653 scaffolds

Scaffold N50:   42,013,519 bp

median GC content(%):   30.80

Hasing T, Tang H, Brym M, Khazi F, Huang T, Chambers AH. A phased Vanilla planifolia genome enables genetic improvement of flavour and production. Nat Food. 2020;1(12):811-819. doi:10.1038/s43016-020-00197-2 [OpenLBID: OLB-PM-37128067]

Chrom Size(Mb) GC% Gene
Chr1 88.302813 31.636 4,619
Chr2 72.752195 29.5582 1,962
Chr3 50.159546 30.9205 1,670
Chr4 50.00726 30.7021 1,817
Chr5 52.221767 31.0932 2,571
Chr6 48.333953 30.6499 1,739
Chr7 42.013519 30.9997 1,722
Chr8 35.524136 30.853 1,538
Chr9 35.31352 31.2374 1,681
Chr10 35.04686 30.9104 1,314
Chr11 37.565561 30.8438 1,410
Chr12 41.046051 31.0459 1,712
Chr13 27.553183 31.3965 1,213
Chr14 23.250241000000003 31.2161 1,066
Unplace 97.662361 30.1572 3,133

tuli