Detail information of vanilla_CR00040_haplotypeA

Organism name:   Vanilla planifolia

Cultivar:   CR00040

Bioproject:   PRJNA753216

Submitter:   CIRAD

Year:   2022

Assembly level:   Chromosome

Sequencing technology   PacBio Sequel II

Genome coverage   288x

Total sequence length:   1,416,741,620 bp

chromosomes and scaffolds:   14 chromosomes and 1 scaffolds

Scaffold N50:   876,467,686 bp

median GC content(%):   30.35

Piet Q, Droc G, Marande W, et al. A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly. Plant Commun. 2022;3(5):100330. doi:10.1016/j.xplc.2022.100330 [OpenLBID: OLB-PM-35617961]

Chrom Size(Mb) GC% Gene
Chr01 73.50 30.44 3,532
Chr02 42.59 30.87 1,426
Chr03 41.87 31.04 1,341
Chr04 36.44 30.22 1,179
Chr05 44.52 31.23 1,907
Chr06 42.39 30.46 1,346
Chr07 39.34 30.13 1,455
Chr08 31.38 30.84 1,229
Chr09 33.51 30.99 1,336
Chr10 32.65 30.72 1,240
Chr11 47.22 21.05 1,228
Chr12 32.78 31.36 1,276
Chr13 22.01 30.83 1,007
Chr14 20.09 26.34 695
Unplace 876.47 30.74 6,195

tuli
chr1chr2chr3chr4chr5chr6chr7chr8chr9chr10chr11chr12chr13chr14