1. TCOD
  2. Assembly
  3. pepper_reyin

Detail information of pepper_reyin

Organism name:   Piper nigrum

Cultivar:   Cv. Reyin1

Bioproject:   PRJNA529758

Submitter:   Huazhong Agricultural University

Year:   2019

Assembly level:   Chromosome

Sequencing technology   Illumina; PacBio; Bionano

Genome coverage   275x

Total sequence length:   761,218,309 bp

chromosomes and scaffolds:   26 chromosomes and 19 scaffolds

Scaffold N50:   29,812,524 bp

median GC content(%):   38.00

Hu L, Xu Z, Wang M, et al. The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis. Nat Commun. 2019;10(1):4702. Published 2019 Oct 16. doi:10.1038/s41467-019-12607-6 [OpenLBID: OLB-PM-31619678]

Chrom Size(Mb) GC% Gene
Chr1 48.45 38.03 3,996
Chr2 43.10 37.53 4,159
Chr3 39.38 37.07 3,796
Chr4 37.19 37.69 3,460
Chr5 36.78 37.35 3,518
Chr6 33.61 40.62 2,240
Chr7 32.74 37.61 3,346
Chr8 32.73 37.54 3,074
Chr9 32.48 38.13 2,455
Chr10 31.23 38.43 2,216
Chr11 29.81 38.26 2,223
Chr12 29.60 37.73 2,077
Chr13 29.43 38.50 2,465
Chr14 29.03 38.78 1,917
Chr15 28.69 37.97 2,628
Chr16 27.95 38.47 2,159
Chr17 25.72 38.23 1,924
Chr18 25.56 37.36 2,028
Chr19 24.81 38.03 1,990
Chr20 24.28 37.98 1,977
Chr21 22.26 37.87 1,587
Chr22 22.17 38.18 1,783
Chr23 20.44 37.48 1,562
Chr24 19.85 38.32 1,616
Chr25 18.22 37.67 1,847
Chr26 14.91 37.07 1,384
Unplace 0.78 36.69 39

tuli
chr1chr2chr3chr4chr5chr6chr7chr8chr9chr10chr11chr12chr13chr14chr15chr16chr17chr18chr19chr20chr21chr22chr23chr24chr25chr26