TCOD eachassembly

Organism name: Piper nigrum

Cultivar: Cv. Reyin1

Bioproject: PRJNA529758

Submitter: Huazhong Agricultural University

Year: 2019

Assembly level: Chromosome

Sequencing technology Illumina; PacBio; Bionano

Genome coverage 275x

Total sequence length: 761,218,309 bp

chromosomes and scaffolds: 26 chromosomes and 19 scaffolds

Scaffold N50: 29,812,524 bp

median GC content(%): 38.00

Hu L, Xu Z, Wang M, et al. The chromosome-scale reference genome of black pepper provides insight into piperine biosynthesis. Nat Commun. 2019;10(1):4702. Published 2019 Oct 16. doi:10.1038/s41467-019-12607-6 [OpenLBID: OLB-PM-31619678]

Chrom	Size(Mb)	GC%	Gene
Chr1	48.451882	38.033	3,996
Chr2	43.104928	37.5281	4,159
Chr3	39.384597	37.0699	3,796
Chr4	37.18938	37.6895	3,460
Chr5	36.778867	37.3487	3,518
Chr6	33.61236	40.6209	2,240
Chr7	32.737202	37.6071	3,346
Chr8	32.725476	37.5383	3,074
Chr9	32.482239	38.1331	2,455
Chr10	31.231022	38.4333	2,216
Chr11	29.812524	38.2557	2,223
Chr12	29.600758000000003	37.7292	2,077
Chr13	29.427894000000002	38.4973	2,465
Chr14	29.032553	38.7848	1,917
Chr15	28.693427	37.9681	2,628
Chr16	27.948387	38.4739	2,159
Chr17	25.720905	38.2302	1,924
Chr18	25.555373	37.3552	2,028
Chr19	24.808771	38.0293	1,990
Chr20	24.284306	37.9812	1,977
Chr21	22.260265	37.8665	1,587
Chr22	22.167516	38.1767	1,783
Chr23	20.442519	37.4769	1,562
Chr24	19.853247	38.3242	1,616
Chr25	18.224314999999997	37.6701	1,847
Chr26	14.906709999999999	37.0665	1,384
Unplace	0.780886	36.6894	39

Detail information of pepper_reyin