1. TCOD
  2. Assembly
  3. mango_Alphonso

Detail information of mango_Alphonso

Organism name:   Mangifera indica

Cultivar:   Alphonso

Bioproject:   PRJNA487154

Submitter:   Beijing Institute of Genomics, Chinese Academy of Sciences

Year:   2020

Assembly level:   Chromosome

Sequencing technology   Pacbio Sequel II

Genome coverage   240x

Total sequence length:   392,983,452 bp

chromosomes and scaffolds:   20 chromosomes and 232 scaffolds

Scaffold N50:   17,652,500 bp

median GC content(%):   32.73

Wang P, Luo Y, Huang J, et al. The genome evolution and domestication of tropical fruit mango. Genome Biol. 2020;21(1):60. Published 2020 Mar 6. doi:10.1186/s13059-020-01959-8 [OpenLBID: OLB-PM-32143734]

Chrom Size(Mb) GC% Gene
Chr1 29.46 32.46 2,856
Chr2 24.40 32.49 2,423
Chr3 23.14 32.88 2,495
Chr4 21.51 32.72 2,281
Chr5 21.08 33.11 2,358
Chr6 18.81 32.41 1,841
Chr7 20.62 32.47 2,207
Chr8 18.24 33.46 2,139
Chr9 18.23 32.52 1,798
Chr10 17.65 32.37 1,665
Chr11 17.14 32.87 1,581
Chr12 16.03 32.77 1,703
Chr13 15.46 32.50 1,383
Chr14 14.81 32.68 1,528
Chr15 14.77 32.24 1,211
Chr16 13.82 32.37 1,273
Chr17 13.51 32.42 1,231
Chr18 13.37 32.63 1,184
Chr19 13.09 32.46 1,195
Chr20 12.29 32.25 1,064
mitochondrion 0.87 44.42 -
chloroplast 0.15 37.75 -
Unplace 34.52 33.52 2,956

tuli
chr1chr2chr3chr4chr5chr6chr7chr8chr9chr10chr11chr12chr13chr14chr15chr16chr17chr18chr19chr20