1. TCOD
  2. Assembly
  3. mango_Hongxiangya

Detail information of mango_Hongxiangya

Organism name:   Mangifera indica

Cultivar:   Hongxiangya

Bioproject:   PRJCA002248

Submitter:   South China Agricultural University

Year:   2020

Assembly level:   Chromosome

Sequencing technology   Illumina Hiseq;PacBio Sequel II

Genome coverage   300x

Total sequence length:   371,620,806 bp

chromosomes and scaffolds:   20 chromosomes and 8 scaffolds

Scaffold N50:   18,777,690 bp

median GC content(%):   32.61

Wei Li, et al. SMRT sequencing generates the chromosome-scale reference genome of tropical fruit mango, Mangifera indica. bioRxiv. 2020.

Chrom Size(Mb) GC% Gene
chr1 17.27 32.44 1,527
chr2 19.96 32.38 1,809
chr3 18.78 32.55 1,854
chr4 22.01 32.90 2,304
chr5 18.04 32.50 1,640
chr6 13.93 32.39 1,114
chr7 16.89 32.54 1,364
chr8 20.97 32.60 1,858
chr9 22.27 32.67 2,245
chr10 12.45 32.48 976
chr11 23.91 33.19 2,357
chr12 15.00 32.71 1,476
chr13 18.75 32.55 1,712
chr14 13.87 32.77 1,200
chr15 13.63 32.79 1,498
chr16 19.59 33.12 2,174
chr17 11.94 32.26 1,012
chr18 21.87 32.34 1,905
chr19 27.76 32.54 2,573
chr20 18.15 32.30 1,564
Unplace 4.57 32.19 360

tuli
chr1chr2chr3chr4chr5chr6chr7chr8chr9chr10chr11chr12chr13chr14chr15chr16chr17chr18chr19chr20