1. TCOD
  2. Assembly
  3. mango_Alphonso

Detail information of mango_Alphonso

Organism name:   Mangifera indica

Cultivar:   Alphonso

Bioproject:   PRJNA487154

Submitter:   Beijing Institute of Genomics, Chinese Academy of Sciences

Year:   2020

Assembly level:   Chromosome

Sequencing technology   Pacbio Sequel II

Genome coverage   240x

Total sequence length:   392,983,452 bp

chromosomes and scaffolds:   20 chromosomes and 232 scaffolds

Scaffold N50:   17,652,500 bp

median GC content(%):   32.73

Wang P, Luo Y, Huang J, et al. The genome evolution and domestication of tropical fruit mango. Genome Biol. 2020;21(1):60. Published 2020 Mar 6. doi:10.1186/s13059-020-01959-8 [OpenLBID: OLB-PM-32143734]

Chrom Size(Mb) GC% Gene
Chr1 29.456599999999998 32.4559 2,856
Chr2 24.397897 32.4916 2,423
Chr3 23.139393 32.8755 2,495
Chr4 21.5075 32.7167 2,281
Chr5 21.083371 33.1072 2,358
Chr6 18.81196 32.4121 1,841
Chr7 20.62312 32.4651 2,207
Chr8 18.243469 33.4569 2,139
Chr9 18.233274 32.517 1,798
Chr10 17.6525 32.3742 1,665
Chr11 17.144574000000002 32.8725 1,581
Chr12 16.029966 32.7742 1,703
Chr13 15.457994000000001 32.5024 1,383
Chr14 14.810209 32.6826 1,528
Chr15 14.76596 32.2367 1,211
Chr16 13.817227 32.374 1,273
Chr17 13.506272999999998 32.4215 1,231
Chr18 13.371754000000001 32.6284 1,184
Chr19 13.093066 32.4624 1,195
Chr20 12.294262 32.2531 1,064
mitochondrion 0.871458 44.4163 -
chloroplast 0.150346 37.7536 -
Unplace 34.521279 33.5185 2,956

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