1. TCOD
  2. Assembly
  3. cassava_AM560_JGI_v8

Detail information of cassava_AM560_JGI_v8

Organism name:   Manihot esculenta

Cultivar:   AM560

Bioproject:   PRJNA234389

Submitter:   DOE-Joint Genome Institute

Year:   2021

Assembly level:   Chromosome

Sequencing technology   PacBio RSII; Sequel

Genome coverage   97x

Total sequence length:   639,586,700 bp

chromosomes and scaffolds:   18 chromosomes and 66 scaffolds

Scaffold N50:   34,668,054 bp

median GC content(%):   37.51

Bredeson, J.V., Shu, S., Berkoff, K., Lyons, J.B., Caccamo, M., Santos, B., Ovalle, T., Bart, R.S., Augusto Becerra Lopez-Lavalle, L., Carvajal Yepes, M., Aranzales, E., Wenzl, P., Jannink, J.-L., Dyer, S., Rokhsar, D.S. "An improved reference assembly for cassava (Manihot esculenta Crantz)". In preparation.

Chrom Size(Mb) GC% Gene
Chr01 42.998273999999995 36.9823 2,698
Chr02 38.567855 37.0001 2,215
Chr03 33.309256999999995 36.4484 2,109
Chr04 35.938211 36.6313 1,672
Chr05 33.68157 36.5913 2,056
Chr06 30.819343 36.9712 1,772
Chr07 34.668054 37.1719 1,537
Chr08 41.806886 38.1816 1,743
Chr09 37.838006 37.0014 1,992
Chr10 32.070051 37.103 1,566
Chr11 33.098381 36.0077 1,756
Chr12 37.136911 37.6489 1,640
Chr13 36.952686 37.9216 1,619
Chr14 29.308386 36.7856 1,746
Chr15 32.923186 37.4591 1,932
Chr16 34.171074999999995 37.8984 1,405
Chr17 35.156893 39.015 1,342
Chr18 33.477107000000004 38.1265 1,456
Unplace 5.664568 45.6158 549

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