The oil palm, belonging to the genus Elaeis in the palm family (Arecaceae), is a tree that has a long evolutionary history, with fossils dating back to the Cretaceous period. It is considered one of the oldest families of flowering plants. The oil palm is renowned as one of the most productive oil crops, capable of yielding a significantly higher amount of oil from its fruit compared to soybeans, earning it the name "oil palm". Despite occupying only 5% of the world's total vegetable oil acreage, palm oil constitutes 33% of the global vegetable oil market and 45% of the edible oil market.
The oil palm is distributed within the latitudes of 10°S to 15°N, predominantly in the lowland areas below 150 meters above sea level. It is commonly found along the edges of humid forests in Africa, particularly in western and central Africa, as well as in Malaysia and Indonesia in Asia. In addition, it is also distributed in the northern parts of South America and Central America.
China has introduced and cultivated oil palm mainly in the regions of Hainan, Yunnan, Guangdong, and Guangxi.
Elaeis guineensis, native to West and Southwest Africa, is the primary source of palm oil. In 2013, the Malaysian Palm Oil Board used Roche/454 and Sanger BAC end-sequencing technologies to assemble a total of 40,072 scaffolds, with a scaffold N50 of 1.26 Mb. Additionally, transcriptome data from 30 different tissue types were utilized to predict a minimum of 34,802 genes.
Ong et al. from the Department of Biotechnology and Breeding, Sime Darby Plantation Research and Development Centre, School of Biological Sciences, University of Nottingham, UK and School of Biological Sciences, University of Nottingham, Malaysia published an expanded version of the E. guineensis genome using linkage-directed genome assembly to improve the reference genome described above. The newly assembled genome, referred to as PMv6, has an N50 of 83.1 Mb, increasing the scaffold assignment of oil palm pseudomolecules from 43% to 77% (1.2 Gb). On average, each pseudomolecule in the PMv6 genome was assembled with 142 scaffolds with an average length of 73.7 Mb, compared to only 19 scaffolds with an average length of 41.1 Mb reported by Singh et al. in 2013.
Deli dura originates from four palm trees planted at the Botanic Gardens of Buitenzorg in 1848. It is characterized by thick endosperm, high bunch count, and high mesocarp oil content. It has become a crucial genetic resource in major breeding programs in Southeast Asia. The genome of Deli dura was sequenced and assembled by the Temasek Life Sciences Laboratory at the National University of Singapore. They used Illumina HiSeq 2500, MiSeq, and Roche 454 sequencing technologies, resulting in a draft genome size of 1.701 Gb, covering 94.49% of the oil palm genome. The assembly comprised 10,971 scaffolds, with an N50 size of 0.76 Mb. Gene annotation analysis predicted the presence of 36,105 genes.
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Data Statistics | |
---|---|
Taxonomy ID | 51953 |
Projects | 12 |
Samples | 240 |
Genomes | 1 |
Variations | 25,181,762 |
Expressions | 10 |
Reference | oil_palm_African |
Refgenes | 32,097 |
Cultivars | 91 |