| ProjectID | SRAStudy | BioProjectID | #Samples | #Runs | Organism | AssayType | Description | Submission | ReleaseDate | Publication | Category |
|---|---|---|---|---|---|---|---|---|---|---|---|
| TCODP0012 | CRA004264 | PRJCA004986 | 545 | 336 | Hevea brasiliensis | WGS | Resequencing of 336 rubber tree accessions | CATAS-RRI | 2023 | OLB-PM-37532727 | - |
| TCODP0027 | SRP155829 | PRJNA483203 | 24 | 24 | Hevea brasiliensis | RNA-Seq | We performed a RNA-seq analysis in rubber tree to identify transcripts involved in cold stress response. Moreover, alternative splicing events and molecular markers were identified | University of Campinas | 2018 | - | Abiotic stress; |
| TCODP0028 | SRP095295 | PRJNA357682 | 6 | 6 | Hevea brasiliensis | RNA-Seq | Laticifers are highly specialized cells that synthesize and store natural rubber. Rubber trees (Hevea brasiliensis Muell. Arg.) contain both primary and secondary laticifers. To reveal the functions of these two different cells, a comparative transcriptome analysis was conducted and the results revealed that genes involved in cell wall modification, such as pectin esterase, lignin metabolic enzymes, and expansins, were highly up-regulated in the primary laticifers and correspond to its necklace-like morphology. | ITBB, CATAS | 2016 | OLB-PM-28600566 | Growth and development trait;Tissue; |
| TCODP0029 | SRP274325 | PRJNA646309 | 18 | 18 | Hevea brasiliensis | RNA-Seq | This study provides important information to elucidate the molecular regulation during rubber tree late somatic embryogenesis | Institute of Tropical Bioscience and Biotechnology,Chinese Academy of Tropical Agricultural Science | 2020 | OLB-PM-33711923 | Growth and development trait;Tissue; |
| TCODP0030 | SRP331616 | PRJNA752925 | 9 | 9 | Hevea brasiliensis | RNA-Seq | Tapping panel dryness (TPD) seriously affects the natural rubber (NR) production of Hevea brasiliensis (rubber tree). Several studies have speculated that TPD influences NR biosynthesis in the latex of rubber trees based on the expression changes of NR biosynthesis-related genes. In this study, we verified that the NR biosynthesis activity of TPD-affected rubber trees (TPD trees) latex is lower than that of healthy rubber trees (healthy trees) using NR biosynthesis in vitro assays and found that the molecular weight of NR synthesized by TPD trees is larger than that of healthy trees by gel penetration chromatography analysis | CATAS | 2021 | - | Disease; |
| TCODP0031 | SRP112717 | PRJNA394848 | 21 | 21 | Hevea brasiliensis | RNA-Seq | RNAseq analysis of latex samples from healthy and Tapping Panel Dryness-affected trees. | IPS2, INRA - CNRS - UPSUD | 2017 | OLB-PM-29855601 | Disease; |
| TCODP0032 | SRP132129 | PRJNA432826 | 24 | 24 | Hevea brasiliensis | RNA-Seq | In this study, the cold resistant clone CATAS93-114 and sensitive Reken501 were subjected to cold stress, and their transcriptomes were analyzed at the timepoint of 0 h, 2 h, 8 h and 24 h. | Chinese Academy of Tropical Agriculture Science | 2018 | OLB-PM-29474681 | Abiotic stress; |