SampleID | BioSampleID | gvcf/vcf | Bam | ProjectID | SampleName | CultivarInfo | CultivarID | Organism | Tissue | Country | BiomaterialProvider | #Runs | AssayType | Platform | Instrument | LibraryLayout | Disease | Age | Treatment | Description | Overall Alignment Rate |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TCODI01971 | SAMN04009753 | - | - | TCODP0046 | Q1 | ROC26 | - | sugarcane | Leaves | China | La Trobe University | 1 | RNA-Seq | ILLUMINA | Illumina HiSeq 2500 | PAIRED | - | New born | - | Q1-leaf abscission sugarcane varieties-parent | 0.9011 |
TCODI01972 | SAMN04009754 | - | - | TCODP0046 | Q2 | ROC26 | - | sugarcane | Leaves | China | La Trobe University | 1 | RNA-Seq | ILLUMINA | Illumina HiSeq 2500 | PAIRED | - | New born | - | Q2-leaf packaging sugarcane varieties-F1 generation | 0.9148 |
TCODI01973 | SAMN04009755 | - | - | TCODP0046 | B1 | ROC26 | - | sugarcane | Leaves | China | La Trobe University | 1 | RNA-Seq | ILLUMINA | Illumina HiSeq 2500 | PAIRED | - | New born | - | B1-leaf packaging sugarcane varieties-F1 generation | 0.914 |
TCODI01974 | SAMN04009756 | - | - | TCODP0046 | B2 | ROC26 | - | sugarcane | Leaves | China | La Trobe University | 1 | RNA-Seq | ILLUMINA | Illumina HiSeq 2500 | PAIRED | - | New born | - | B2-leaf packaging sugarcane varieties-F1 generation | 0.9123 |
TCODI01975 | SAMN04009757 | - | - | TCODP0046 | T1 | ROC26 | - | sugarcane | Leaves | China | La Trobe University | 1 | RNA-Seq | ILLUMINA | Illumina HiSeq 2500 | PAIRED | - | New born | - | T1-leaf abscission sugarcane varieties-F1 generation | 0.9101 |
TCODI01976 | SAMN04009758 | - | - | TCODP0046 | T2 | ROC26 | - | sugarcane | Leaves | China | La Trobe University | 1 | RNA-Seq | ILLUMINA | Illumina HiSeq 2500 | PAIRED | - | New born | - | T2-leaf abscission sugarcane varieties-F1 generation | 0.9001 |
TCODI01977 | SAMN06765488 | - | - | TCODP0045 | H_60d_1 | Badila | sofb190 | sugarcane | Stalk | China | Guangxi University, Nanning, China | 1 | RNA-Seq | ILLUMINA | Illumina HiSeq 4000 | PAIRED | Healthy | 60-days age | - | heathy_for_60_days | 0.9367 |
TCODI01978 | SAMN06765489 | - | - | TCODP0045 | H_60d_2 | Badila | sofb190 | sugarcane | Stalk | China | Guangxi University, Nanning, China | 1 | RNA-Seq | ILLUMINA | Illumina HiSeq 4000 | PAIRED | Healthy | 60-days age | - | heathy_for_60_days | 0.9373 |
TCODI01979 | SAMN06765490 | - | - | TCODP0045 | H_60d_3 | Badila | sofb190 | sugarcane | Stalk | China | Guangxi University, Nanning, China | 1 | RNA-Seq | ILLUMINA | Illumina HiSeq 4000 | PAIRED | Healthy | 60-days age | - | heathy_for_60_days | 0.9343 |
TCODI01980 | SAMN06765491 | - | - | TCODP0045 | I_60d_1 | Badila | sofb190 | sugarcane | Stalk | China | Guangxi University, Nanning, China | 1 | RNA-Seq | ILLUMINA | Illumina HiSeq 4000 | PAIRED | Leifsonia xyli subsp. xyl-infected | 60-days age | - | Leifsonia_xyli_subsp._xyli_infection_for_60_days | 0.9355 |