CIRI-hub

Note!
Please input CIRIquant results for your RNA-Seq dataset or convert results from other circRNA prediction tools into the same format.

CIRIquant:circRNA_bsj.csv/CIRI2:please download merge_file.py as a reference to merge the outfiles. Input file format: csv matrix

CIRIquant:gene_counts.csv/HISAT2+StringTie(with -B),deal_gene as a pipeline to generate the count file. Input file format: csv matrix

The file should contain the following columns: Sample ID, total reads, mapping reads and group information(normal vs. tumor, C vs. T, normal vs. cancer). Input file format: csv matrix

CIRIquant:circRNA_de.csv.Differential expression analysis for circRNAs was preformed by CIRIquant. If you haven't preformed this step, CIRI-hub will do this step.Input file format: csv matrix

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Note! Input the position (e.g. chr9:5968019|5988545) or id (e.g. hsa-UBAP2_0005) of your circRNA.

Input circRNA Paste an example

Select Datasets

Input previous Job ID(optional)

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Note! Input a list of circRNA ids (one id per line).

Input circRNA Paste an example

Select Datasets

Input previous Job ID

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