One-stop Analyze


CIRIquant:circRNA_bsj.csv/CIRI2:please download merge_file.py as a reference to merge the outfiles. Input file format: csv matrix
CIRIquant:gene_counts.csv/HISAT2+StringTie(with -B),deal_gene as a pipeline to generate the count file. Input file format: csv matrix
The file should contain the following columns: Sample ID, total reads, mapping reads and group information(normal vs. tumor, C vs. T, normal vs. cancer). Input file format: csv matrix

CIRIquant:circRNA_de.csv.Differential expression analysis for circRNAs was preformed by CIRIquant. If you haven't preformed this step, CIRI-hub will do this step.Input file format: csv matrix
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